Great news for python lovers: A python version of DESeq2 is out! @biorxivpreprint #bulk #RNAseq #python #bioinformatics
https://www.biorxiv.org/content/10.1101/2022.12.14.520412v1
https://www.biorxiv.org/content/10.1101/2022.12.14.520412v1
@haojiawu @biorxivpreprint this is very interesting. I have been telling people that one of the main reasons for using #RStats instead of #python for gene expression analysis, is the lack of methods such as #DESeq2 or #limma as python libraries. This might tip the balance for a lot of people.
Of course there are many reasons to prefer R, the excellent #Bioconductor ecosystem one of them, and in fairness, for #scRNA analysis python has very strong ecosystem and community.