Looking for recommendations for a tool or #pipeline for binning of metaviromic reads. Anyone?

#metagenomics #bioinformatics

@zwets Might want to take a look at this workflow https://github.com/mtisza1/Cenote-Taker2
GitHub - mtisza1/Cenote-Taker2: Cenote-Taker2: Discover and Annotate Divergent Viral Contigs

Cenote-Taker2: Discover and Annotate Divergent Viral Contigs - GitHub - mtisza1/Cenote-Taker2: Cenote-Taker2: Discover and Annotate Divergent Viral Contigs

GitHub

@dsmith thanks, taking a look at Cenote-Taker2.

Also found https://github.com/putonti/virMine but somewhat baffled by how it is set up: to run it you build a Docker image with the input files baked into it 🧐 .

That's taking #reproducibility to a whole new level.

GitHub - putonti/virMine

Contribute to putonti/virMine development by creating an account on GitHub.

GitHub