Mastodawn

Want to help shaping the future of #Snakemake? Then participate in the Snakemake hackathon 2026 in Munich! There's still room as the maximum number of participants is not yet reached. You can register here: https://indico.cern.ch/e/snakemake-meeting-2026

#sciworkflows #reproducibility

Snakemake Hackathon March 2026

We are excited to announce the Snakemake Hackathon 2026, to be held 9-13 March, 2026 at the Technical University Munich. This event will bring together passionate developers and data scientists to collaborate on and innovate with the Snakemake workflow management system. We plan to fix issues, improve usability, implement new features and plugins, and advance Snakemake’s ecosystem of tool wrappers and workflows, across all scientific domains. Organizers Johannes Köster (University of...

Indico

Johannes Köster Sep 23

Version 3 of the Snakemake rolling paper is now pulbished on #F1000Research: https://f1000research.com/articles/10-33/v3
We have updated the presented features and the design patterns.
#sciworkflows #reproducibility

F1000Research Article: Sustainable data analysis with Snakemake.

Read the latest article version by Felix Mölder, Kim Philipp Jablonski, Brice Letcher, Michael B. Hall, Peter C. van Dyken, Christopher H. Tomkins-Tinch, Vanessa Sochat, Jan Forster, Filipe G. Vieira, Christian Meesters, Soohyun Lee, Sven O. Twardziok, Alexander Kanitz, Jake VanCampen, Venkat Malladi, Andreas Wilm, Manuel Holtgrewe, Sven Rahmann, Sven Nahnsen, Johannes Köster, at F1000Research.

Johannes Köster Nov 28, 2024

#Snakemake 8.25.4 has been released with lots of little bug fixes: https://snakemake.readthedocs.io/en/stable/project_info/history.html #sciworkflows #reproducibility

Changelog | Snakemake 9.10.0 documentation

Johannes Köster Sep 23, 2024

#Snakemake 8.20.4 has been released. It provides a massive speedup of job processing, most notable during dry-run. #sciworkflows #reproducibility https://snakemake.github.io

Snakemake

Johannes Köster Sep 20, 2024

New #snakemake_wrappers release with 17 updates and 1 new wrapper! https://snakemake-wrappers.readthedocs.io #sciworkflows #reproducibility

The Snakemake Wrappers repository | Snakemake wrappers

Johannes Köster Aug 19, 2024

Lot's of new #snakemake and #snakemake plugin releases in the last days, with a plethora of bug fixes and small feature improvements. https://snakemake.github.io #sciworkflows #reproducibility

Snakemake

Johannes Köster Jun 11, 2024

#snakemake 8.14 has been released. It supports setting the shell to use per rule if needed (e.g. if your analysis step runs in a container that does not have bash shell).
#sciworkflows #reproducibility
https://snakemake.github.io

Snakemake

Common Workflow Language May 9, 2024

Session 2 of the CWL Conference 2024 starts in an hour!

Program: https://www.commonwl.org/conferences/2024/#onlinesession2Schedule

You can still sign up for free; we give you the connection information automatically: https://forms.gle/1q2q7t5vVVjUhGKR7

Can't attend Session 2, or did you miss Session 1? No worries, the videos are already online and linked from the program. Click through and you can also leave questions and comments for the presenters.

#CommonWL #SciWorkflows