Johannes KösterSep 20, 2024
New #snakemake_wrappers release with 17 updates and 1 new wrapper! https://snakemake-wrappers.readthedocs.io #sciworkflows #reproducibility
The Snakemake Wrappers repository | Snakemake wrappers

Johannes KösterDec 16, 2023
#snakemake_wrappers 3.3 have been released, adding wrappers for downloading datasets from Entrez/NCBI and EGA, as well as updating 75 other wrappers. https://snakemake-wrappers.readthedocs.io/en/stable/changelog.html#id4
Changelog

3.3.1(2023-12-15): Miscellaneous Chores: release 3.3.1 ( 530381f). 3.3.0(2023-12-15): Features: add wrapper for fetching files from EGA (#2488) ( 3d29dcf). Bug Fixes: add error handling to entrez w...

Snakemake Wrappers
Johannes KösterNov 23, 2023
#snakemake_wrappers 3.0 are released, featuring 53 updated wrappers, improvements for @ensembl sequence retrieval, and a rewritten generic bbtools wrapper. Many thanks to the #community! https://github.com/snakemake/snakemake-wrappers/releases/tag/v3.0.0
Release v3.0.0 · snakemake/snakemake-wrappers

⚠ BREAKING CHANGES replace all bbtool wrappers with one bbtool wrapper for all subcommands (#1322) Features allow for specifying multiple chromosomes in ensembl reference dna sequence download w...

GitHub
Johannes KösterNov 13, 2023
Lots of updates in #snakemake_wrappers. Besides >100 updated wrappers, We've added conda pinnings, which greatly improve the robustness as deployment now always uses exactly the same package versions as used during testing in CI. https://snakemake-wrappers.readthedocs.io
The Snakemake Wrappers repository | Snakemake wrappers

Johannes KösterJun 29, 2023
There is a new #snakemake_wrappers release with lots of version updates, some fixes and two new wrappers, contributed by our awesome community!
https://snakemake-wrappers.readthedocs.io
The Snakemake Wrappers repository | Snakemake wrappers

Johannes KösterMay 13, 2023
New #snakemake_wrappers release 1.30 with lots of new wrappers, updated wrappers and fixes. Big thanks to the community for all the contributions! https://github.com/snakemake/snakemake-wrappers/releases/tag/v1.30.0
Release v1.30.0 · snakemake/snakemake-wrappers

Features add memory inference to samtools sort (#1208) (d70a806) deeptools bamcoverage (#1237) (ee2413b) deeptools plotcoverage (#1241) (d08e4c6) DeseqDataSet from multiple input (#1326) (25d8a07)...

GitHub
Johannes KösterApr 24, 2023
#snakemake_wrappers 1.26 are released. The various wrappers have been extended and improved, a vsearch wrapper has been added and over 100 wrappers have been updated! Thanks, community!
Johannes KösterMar 23, 2023
#Snakemake_wrappers 1.25.0 are released. Several new wrappers (bbtools tadpole and loglog, seqkit, merqury) contributed by fgvieira, lots of version updates, and a massive overhaul of java memory handling by David Lähnemann. https://snakemake-wrappers.readthedocs.io
The Snakemake Wrappers repository | Snakemake wrappers

Johannes KösterFeb 7, 2023
#snakemake_wrappers 1.23 is released, with 27 updated wrappers and a new wrapper for #GATK "LeftAlignAndTrimVariants". https://snakemake-wrappers.readthedocs.io
The Snakemake Wrappers repository | Snakemake wrappers

Johannes KösterDec 12, 2022
#snakemake_wrappers 1.21.0 are released, with 15 updated wrappers, bugfixes for bcftools wrappers, and usability improvements for arriba and sambamba wrappers. https://snakemake-wrappers.readthedocs.io https://github.com/snakemake/snakemake-wrappers/releases #sciworkflows #reproducibility
The Snakemake Wrappers repository | Snakemake wrappers