Show threadBgee databaseNov 27, 2023
Single-cell provides very fine detail in anatomical enrichment tests of gene expression, for example genes with FlyBase phenotypes of reduced fertility: https://www.bgee.org/analysis/top-anat/55574711b6b7916fddcff5af83ce10200b88cb3f
Thus with Bgee you can do tests of enrichment of cell types over #FlyCellAtlas! #TopAnat
@SIB
Show threadBgee databaseSep 25, 2023
@jeffreymgood Those top 10 accelerated genes are indeed significantly enriched in expression in testis substructures #TopAnat https://www.bgee.org/analysis/top-anat/2278740e0e9f6a1c181ab9c38dd25166943c91d9
Bgee databaseDec 19, 2022
Did you know you can retrieve annotation and gene expression data from #Bgee and perform #TopAnat analyses in #BioContainers? It's the fashionable way to access curated #GeneExpression 😎
https://biocontainers.pro/tools/bioconductor-bgeedb
#BioConda #Singularity #Docker #bioinformatics #biocuration #RNAseq #microarrays #UberAnat #SIB
BioContainers Community including registry, documentation, specification

BioContainers Community including registry, documentation, specification