Kay SchneitzJun 4, 2024

Are you interested in the diversity of cellular patterns underlying morphogenesis and how it relates to morphogenesis? What about identifying such patterns in an objective way using topology? Look at our paper by first author Tejasvinee Mody just out in DEVELOPMENT. It provides a 3D digital atlas of ovule development in Cardamine. Terrific collab with mathematicians of Ulrich Bauer's group at TUM.

https://doi.org/10.1242/dev.202590

#PlantScience #PlantDevelopment #PlantEvoDevo

Topological analysis of 3D digital ovules identifies cellular patterns associated with ovule shape diversity

Summary: A combination of topological analysis and quantitative morphometrics of 3D digital ovules at cellular resolution reveals shape-relevant diversity in 3D cellular architecture between ovules of Cardamine hirsuta and Arabidopsis thaliana.

The Company of Biologists
Kay SchneitzFeb 21, 2024

There is the "go-nuclear" GitHub repository accompanying our just submitted paper on robust and widely applicable 3D nuclear segmentation. Lot's of background and methodology.

https://github.com/kreshuklab/go-nuclear

https://bit.ly/3uG2Brd

#PlantScience #PlantBiology #PlantDevelopment #PlantCellBio #PlantEvoDevo

GitHub - kreshuklab/go-nuclear: Guides and code for 3D nuclear instance segmentation

Guides and code for 3D nuclear instance segmentation - kreshuklab/go-nuclear

GitHub
Kay SchneitzFeb 21, 2024

Really nice work of first authors Athul Vijayan, Tejasvinee Mody and Qin Yu. Great collaboration between biologists and computer scientists. Need robust 3D nuclear segmentation? In deeper tissue layers with poor nuclear staining? Wide applicability? Cell-nucleus geometric parameters? This and more in our latest paper..

https://bit.ly/3uG2Brd

#PlantScience #PlantBiology #PlantDevelopment #PlantCellBio #PlantEvoDevo