There is the "go-nuclear" GitHub repository accompanying our just submitted paper on robust and widely applicable 3D nuclear segmentation. Lot's of background and methodology.
https://github.com/kreshuklab/go-nuclear
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Really nice work of first authors Athul Vijayan, Tejasvinee Mody and Qin Yu. Great collaboration between biologists and computer scientists. Need robust 3D nuclear segmentation? In deeper tissue layers with poor nuclear staining? Wide applicability? Cell-nucleus geometric parameters? This and more in our latest paper..
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Kay Schneitz