#RStats #GenomicsIO #Duckdb

The duckdb C API and the related extension mechanism is underrated

template from which i just copy the two headers and transform a python script to bash and remove the cmake stuff !
https://github.com/duckdb/extension-template-c/tree/main

vibe coded extension for some application use https://github.com/RGenomicsETL/RBCFTools/tree/main/inst/duckdb_bcf_reader_extension

#RStats #GenomicsIO #RGenomicsETL
just incredible how lax with the specs the average vcf file out there is

so to convert them into #nanoarrow streams/ipc, you either enforce yourself some corrections or go for all strings.