Peter CockJun 18
Asking for #Biopython, but are #GitHubPages sites generally currently #GeoBlocked from #Argentina - see https://github.com/biopython/biopython.github.io/issues/207 and https://biopython.org
Possible IP geoblocking: biopython.org unreachable from Argentina · Issue #207 · biopython/biopython.github.io

Hello Biopython team, I'm writing to report that the main Biopython website (https://biopython.org) appears to be inaccessible from Argentina. I consistently get a "connection timed out" error from...

GitHub
Show threadPeter CockJan 31
@OpenBio only noticed the typo now: it is available on PyPI, but I meant we test running #Biopython under the #PyPy implementation of Python
Show threadPeter CockJan 15
@OpenBio The next commit/pull request will put the #Biopython git repository’s default branch at over 16,000 commits!
Open Bioinformatics FoundationJan 15

#Biopython 1.85 released, supports Python 3.9 through 3.13 and PyPI. https://biopython.org/

Pre-compiled wheels available on PyPI https://pypi.org/project/biopython/1.85/ with #CondaForge to follow soon https://anaconda.org/conda-forge/biopython

Biopython · Biopython

Peter CockNov 7, 2024
Big city life - triaging #Biopython bug reports while finishing my latte in a trendy cafe in Glasgow.
Show threadPeter CockSep 18, 2024
@gedankenstuecke @gravitystorm @openstreetmap The OSM number of contributors looks several magnitudes higher than for #biopython (not surprising), but we’ve not finished our relicensing effort yet 😅
Open Bioinformatics FoundationJun 28, 2024
#Biopython 1.84 has been released, see https://www.open-bio.org/2024/06/28/biopython-1-84-released/ or https://mailman.open-bio.org/pipermail/biopython/2024-June/017055.html - or https://github.com/biopython/biopython/blob/biopython-184/NEWS.rst for the change-log. Thank you to everyone who contributed.
OBF » Biopython 1.84 released » Biopython 1.84 released

Open Bioinformatics Foundation Homepage

Show threadSpeech-to-Text.cloudJun 8, 2024
@python_discussions PS: There is also #biopython
Show threadPeter CockJun 7, 2024

@Edent Python has a tradition of functional testing of doctests in docstrings (code snippets within the API docs), and I use a generalised version of this for our main docs in #Biopython.

However that doesn’t solve this use case of testing installation instructions - which seems doable in principle but complex to orchestrate. I wonder if there’s something off the shelf which covers the basics (in Python in particular)? …

Show threadChristos Argyropoulos MD, PhDJan 11, 2024
@mjgardner @Edwardsmoon @BobOHara @bduncan It is a step backwards, likely explained by people migrating to #bioconductor (in #rstats) or #biopython and wanting to break from clean from #perl. However neither R nor python provided the facilities that perl has to deal with features in text and flat text files.