Cameron ThrashWhy methane surged in the atmosphere during the early 2020s https://www.science.org/doi/10.1126/science.adx8262
| Website | https://www.jamstec.go.jp/sugar/e/members/personal/Jackson_M_Tsuji.html |
| GitHub | https://github.com/jmtsuji |
Jackson M. Tsuji
- 48 Followers
- 135 Following
- 175 Posts
Microbiology research fellow at the Japan Agency for Marine-Earth Science and Technology (JAMSTEC) 🔬🦠 Explores the ecology and evolution of life on Earth with special focus on photosynthesis and the iron cycle ☀️⚡🪨🌏
pandasWe are very pleased to announce the release of pandas 3.0.0! 🚀🥳
This major release brings some exciting new features, including:
- a new default string data type
- consistent copy/view behaviour
- changed default resolution for datetime data
- initial support for pd.col() syntax
- ...
alongside many other improvements and bug fixes. But those also come with some potentially breaking changes.
See the blogpost at https://pandas.pydata.org/community/blog/pandas-3.0.html for more details
bioRxiv EvobioNovel genes arise from genomic deletions across the bacterial tree of life https://www.biorxiv.org/content/10.64898/2026.01.05.697752v1?med=mas
Diverse bacteriohemerythrin genes of Methylomonas denitrificans FJG1 provide insight into the survival and activity of methanotrophs in low oxygen ecosystems https://journals.asm.org/doi/full/10.1128/mbio.01533-25?af=R
Redox-driven mineral and organic associations in Jezero Crater, Mars https://www.nature.com/articles/s41586-025-09413-0
Redox-driven mineral and organic associations in Jezero Crater, Mars - Nature
A geological, petrographic and geochemical survey of distinctive mudstone and conglomerate outcrops of the Bright Angel formation on Mars reveals textures, chemical and mineral characteristics, and organic signatures that warrant consideration as potential biosignatures.
Differences in metagenome coverage may confound abundance-based and diversity conclusions and how to deal with them https://academic.oup.com/ismecommun/advance-article/doi/10.1093/ismeco/ycaf140/8250526?rss=1&login=false
Efficient sequence alignment against millions of prokaryotic genomes with LexicMap https://www.nature.com/articles/s41587-025-02812-8
Future ocean warming may cause large reductions in Prochlorococcus biomass and productivity https://www.nature.com/articles/s41564-025-02106-4
Ryan WickNew blog post!
I added a new feature to George Bouras's Pypolca: homopolymer-only polishing. Potentially useful for cross-sample polishing - early test on Cryptosporidium looks promising.
Check it out here:
https://rrwick.github.io/2025/09/04/homopolymer-polishing.html
Autocycler: long-read consensus assembly for bacterial genomes https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btaf474/8242761?rss=1&login=false