217 Followers
128 Following
4 Posts
I write software for Biologists. Founder Fulcrum Genomics, Bioinformatician, Computer Scientist, Coder, Father of 2xGirls. Opinions are my own.
Mapquik, a new read mapper for HiFi reads, is 30-35x faster than the state of the art, with minimal los in accuracy. And it has a fantastic logo to boot! @baris #bioinformatics
Code: http://github.com/ekimb/mapquik
Preprint: https://www.biorxiv.org/content/10.1101/2022.12.23.521809v2
GitHub - ekimb/mapquik: Efficient low-divergence mapping of long reads in minimizer space

Efficient low-divergence mapping of long reads in minimizer space - GitHub - ekimb/mapquik: Efficient low-divergence mapping of long reads in minimizer space

GitHub