How I Used Python to Stop Worrying & Love Emoji in Bioinformatics
It was a thrill to come full circle and bring these projects back to @pyconau where it all began.
And to think, if @glasnt hadn't put emoji in their talk title at PyCon AU 16 these never would have started!
My #pyconau talk on those side project(s) that keep on giving is up!
Avocado🥑 Cheese 🧀 Grape 🍇 Tomato 🍅
or:
How I Used Python to Stop Worrying and Love Emoji in Bioinformatics
https://www.youtube.com/watch?v=E3-AooF8e2k
How I Used Python to Stop Worrying & Love Emoji in Bioinformatics
@davetang @EpicBear Aww thanks mate!
Look, err, if you wait like 24 hours there could be more where that came from...
https://2024.pycon.org.au/program/A78TC9/
Avocado, Cheese, Grape, Tomato or: How I Used Python to Stop Worrying and Love Emoji in Bioinformatics—PyCon AU 2024
@PhilippBayer Soylent Green is Bioinformaticians!
Nice work @davetang !
Torsten's article also inspired this tool and paper (https://academic.oup.com/gigascience/article/8/9/giz109/5572530, https://github.com/bionitio-team/bionitio) which attempts to do it in multiple languages.
We abandoned a bash version for much the same reasons you mention, in terms of libraries for processing fundamentals files, but I always wished we had kept it in.
Thanks for sharing the example, will come in handy for sure!
Bionitio: demonstrating and facilitating best practices for bioinformatics command-line software
AbstractBackground. Bioinformatics software tools are often created ad hoc, frequently by people without extensive training in software development. In particul
At #icg2023 in Melbourne this week, with both serious and not so serious posters.
Visit me at poster 253 and 254 any during the lunch breaks day!
I asked the Twitters this as well, but Bioinformatics Mastodon, what is your worst (best) sequencing quality control story? Looking for examples where something like FastQC has picked up an issue that changed the interpretation of results or saved a lot of spurious analysis. Want to include a real world example in a tutorial, so publicly accessible data preferred.
Please circulate widely! Appointments will be considered at the level of new group leader (Level C) through to experienced Associate Professor (Level D).
Not one but two Group Leader positions in Computational Biology opening up at Peter Mac!
https://careers.petermac.org/job/MELBOURNE-Group-Leader-VIC-3000/937192610/
