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Former musician-wannabe. Current microbial ecologist/bioinformatician @nasa 👽
microbialomics.org <- Bioinformatics for beginners
GToTree <- Phylogenomics for all
he/him

If you are a #bioinformatics developer and have a tool that takes paired-end data, please put in a check that the same file is not being provided to both input-read arguments 🙏 🙏 🙏

And thank you so much to those that do this already 💯

Sincerely, knuckleheads like me ❤️

Finally successfully submitting travel-expense reports should not feel like as much of an accomplishment as it does 🫠

Exciting talk from Steve Vance to NASA Ames today about Europa and the upcoming glorious Europa Clipper mission ❤️ (see: europa.nasa.gov)

  - planned Oct. 2024 launch
- 2030 arrival
  - targeting ~50 flybys over 4 years
  - closest will be 25 km!

As the plate says, it’s time to go #2EUROPA 👍

@seanjungbluth hey man, hope all is well in your world :)

JupyterLab 3.6 has been released! Highlights include RTC and performance improvements, new notifications centre, terminal enhancements and many more.

For more see the release overview on Jupyter Community Forum: https://discourse.jupyter.org/t/jupyterlab-3-6-0-is-released/17808

Full changelog: https://jupyterlab.readthedocs.io/en/stable/getting_started/changelog.html#v3-6

#jupyter #python #R #jupyterlab #notebook

JupyterLab 3.6.0 is released!

JupyterLab 3.6.0 Release Here are the new cool features available in JupyterLab 3.6.0: Real-time collaboration rework Notifications Terminals enhancements Various highlights Performance improvements The full changelog is available there. 👥 Real-time collaboration rework The major work done for 3.6.0 is an important rework of the experimental real-time collaboration feature. In real-time collaboration mode, the current user identity is highlighted in the top right ...

Jupyter Community Forum

@krassowski my hero! ha, seriously thanks a bunch! This not-being-able-to-unrender-specific-markdown-cells is a small thing, but every little bit can help with new folks.

I appreciate you getting me to a way to do this with how things currently are and saving me so much time looking for things myself 🙏

@krassowski thanks for the direction 👍 I'm doing individual jupyterlabs installed through conda on separate cloud instances. But i think the location noted there will work still, i'm trying things at: ${CONDA_PREFIX}/share/jupyter/lab/settings/overrides.json

Adding just this:

```
{
"showEditorForReadOnlyMarkdown" : false
}
```

Is getting through, but coming back with:

```
Failed loading overrides: 'bool' object has no attribute 'items'
```

I'm guessing i need to be more specific...

Thanks again, @krassowski :)

I posted an issue (https://github.com/jupyterlab/jupyterlab/issues/13929).

I was wondering if you knew if/how I can programmatically set the option we are currently changing as noted in the post you pointed me to (https://stackoverflow.com/questions/75227302/preventing-markdown-cells-from-un-rendering-jupyter-showeditorforreadonlymark). Doing it jupyterlab-wide will work for my teaching stuff, but only if i figure out how to set it automatically. Can i just stick/change that setting in an appropriate file somewhere?

Feature Request to be able to set "showEditorForReadOnlyMarkdown" option in cell or notebook metadata · Issue #13929 · jupyterlab/jupyterlab

Problem I'm using notebooks for educational purposes, and would like to be able to configure a notebook (or individual cells) such that the uneditable markdown cells cannot become un-rendered –...

GitHub

@krassowski oh great! Looks like it should work perfectly for me, thanks! And yea will do 👍

I hit another thing too, wondering if we can disable auto-completion/suggestions because I want to introduce shell tab-completion (in a notebook with bash kernel), but tab-ing is bringing up all kinds of things. I put a post here on the jupyter discourse: https://discourse.jupyter.org/t/disabling-tab-auto-complete-suggestions-in-jupyter-notebook-bash-kernel/17819

Thanks for your help!

Disabling tab auto-complete suggestions in jupyter notebook bash kernel

Hiya 🙂 I’m trying to put one of my unix intro lessons into a jupyter notebook. I’m using a bash kernel, but one things i’ve hit is that when i try to use tab-completion, it does show the files and directories of the current working directory, but it also shows other things that are unrelated, e.g. in the attached image, I want only what’s tab-completed-suggested from bash (which here should just be “experiment”, but the others show up. Is there a way i can disable these auto-com...

Jupyter Community Forum