Jerven
Charles Tapley Hoyt
Chris Mungall@jerven @cthoyt ChEBI desperately needs to be simplified and move towards a modern system for managing the classes, this is agreed on after the last ChEBI workshop and the new group lead is on board, slides here: Mungall, C. (2024, November 19). The need for a simpler collaboratively maintained CHEBI hierarchy. CHEBI 2024 Workshop, Hinxton, UK. Zenodo. https://doi.org/10.5281/zenodo.14298221
@jerven @cthoyt chemrof provides the framework for which the different levels of the hierarchy should be managed https://chemkg.github.io/chemrof/ontology/
@jerven @cthoyt more database-style ontologies need this explicit level of metaclasses to manage the different levels in the hierarchy (see https://github.com/OBOFoundry/OBOFoundry.github.io/issues/2454) -- but this is especially the case for ChEBI
@jerven @cthoyt Using it to create our benchmarks for our AI-driven chemical classification program synthesis https://chemkg.github.io/c3p/
@jerven @cthoyt but many people just need the properties (https://chemkg.github.io/chemrof/#slots), and ChEBI themselves are using some of the properties for the new ChEBI, we are using these for our materials KG at my institute, this is where a lot of current efforts are...
@Cmungall I was wondering because I had no reply to my issue. I added ChemRof to the swiss lipids beta rdf. Just wanted to make sure there was progress there.
@jerven answered your issue in GitHub, thanks for the prompt!
@jerven Done, and thanks for your contributions, these are out in a new release: https://github.com/chemkg/chemrof/releases/tag/v0.3.0
