Egon WillighagenAug 24, 2025

new blog post: "The eNanoMapper project deliverables" https://chem-bla-ics.linkedchemistry.info/2025/08/24/the-enanomapper-project-deliverables.html https://doi.org/10.59350/t7kmh-fc360

"This is a bit of an administrative post and historic, but keep coming back to the question, where are all the deliverable of the (past) project. Now, since many eNanoMapper projects were public, we were able to release most of them on Zenodo."

HT @EUCommission for FP7 funding, and project partners!

replies to this post will show up as comments in my blog

#openscience #enanomapper #zenodo

The eNanoMapper project deliverables

This is a bit of an administrative post and historic, but keep coming back to the question, where are all the deliverable of the (past) project. Now, since many eNanoMapper projects were public, we were able to release most of them on Zenodo. This post makes an overview.

chem-bla-ics
Egon WillighagenOct 24, 2024

always nice to hear your research is still relevant :) thanks @jannahastings, @steinbeck, @n10705013 and others!

"eNanoMapper: harnessing ontologies to enable data integration for nanomaterial risk assessment" https://doi.org/10.1186/s13326-015-0005-5

#enanomapper #ontology

eNanoMapper: harnessing ontologies to enable data integration for nanomaterial risk assessment - Journal of Biomedical Semantics

Engineered nanomaterials (ENMs) are being developed to meet specific application needs in diverse domains across the engineering and biomedical sciences (e.g. drug delivery). However, accompanying the exciting proliferation of novel nanomaterials is a challenging race to understand and predict their possibly detrimental effects on human health and the environment. The eNanoMapper project (www.enanomapper.net) is creating a pan-European computational infrastructure for toxicological data management for ENMs, based on semantic web standards and ontologies. Here, we describe the development of the eNanoMapper ontology based on adopting and extending existing ontologies of relevance for the nanosafety domain. The resulting eNanoMapper ontology is available at http://purl.enanomapper.net/onto/enanomapper.owl . We aim to make the re-use of external ontology content seamless and thus we have developed a library to automate the extraction of subsets of ontology content and the assembly of the subsets into an integrated whole. The library is available (open source) at http://github.com/enanomapper/slimmer/ . Finally, we give a comprehensive survey of the domain content and identify gap areas. ENM safety is at the boundary between engineering and the life sciences, and at the boundary between molecular granularity and bulk granularity. This creates challenges for the definition of key entities in the domain, which we also discuss.

BioMed Central
Show threadEgon WillighagenFeb 10, 2023
from the #NanoInformaTIX meeting: an #Python #eNanoMapper API client: https://pypi.org/project/pynanomapper/
pynanomapper

eNanoMapper API client

PyPI