Beep, Beep - I am your friendly #Snakemake release announcement bot.

There is a new release of the 𝐒𝐧𝐚𝐤𝐞𝐦𝐚𝐤𝐞 𝐑𝐞𝐩𝐨𝐫𝐭𝐞𝐫 𝐏𝐥𝐮𝐠𝐢𝐧 𝐟𝐨𝐫 𝐍𝐚𝐧𝐨𝐩𝐮𝐛𝐬 systems. Its version now is 0.3.1!

Give us some time, and you will automatically find the plugin on #Bioconda and #Pypi.

This plugin is relevant for Snakemake users willing to publish
Software Metadata using #nanopubs easyly.
The maintainer is here on Mastodon @rupdecat.

If you discover any issues, please report them on https://github.com/snakemake/snakemake-report-plugin-nanopub/issues.

See https://github.com/snakemake/snakemake-report-plugin-nanopub/releases/tag/v0.3.1 for details. Here is the header of the changelog:
𝑅𝑒𝑙𝑒𝑎𝑠𝑒 𝑁𝑜𝑡𝑒𝑠 (𝑝𝑜𝑠𝑠𝑖𝑏𝑙𝑦 𝑎𝑏𝑏𝑟𝑖𝑔𝑒𝑑):
𝐁𝐮𝐠 𝐅𝐢𝐱𝐞𝐬

* added nanopub hashtag to the announcement message ([70916c3](https://github.com/snakemake/snakemake-report-plugin-nanopub/commit/70916c38aeb420b9264aabe584438d912a00ca68))
* added nanopub hashtag to the announcement message ([c7125ae](https://github.com/snakemake/snakemake-report-plugin-nanopub/commit/c7125aea0dbc9af418244da863a9cdee1111ce57))
* PLugin -> Plugin ([cfade62](https://github.com/snakemake/snakemake-report-plugin-nanopub/commit/cfade62d427dfc0fc614037f700635b2366d8555))
* PLugin -> Plugin ([42a75a3](https://github.com/snakemake/snakemake-report-plugin-nanopub/commit/42a75a36ac6eebef509f7cf45ebbeb5a419c3a4a))
* pytest version minimal 9.0.3 ([b033f9b](https://github.com/snakemake/snakemake-report-plugin-nanopub/commit/b033f9b2db6d9ca3e895e3e1955801ff906...

BEEP, BEEP - I am your friendly #Snakemake release announcement bot.

There is a new release of Snakemake. Its version now is 9.23.0!

Give us some time, and you will automatically find it on #Bioconda and #Pypi.

The maintainer is here on Mastodon -
@johanneskoester .

If you discover any issues, please report them on https://github.com/snakemake/snakemake/issues.

See https://github.com/snakemake/snakemake/releases/tag/v9.23.0 for details. Here is the header of the changelog:
𝑅𝑒𝑙𝑒𝑎𝑠𝑒 𝑁𝑜𝑡𝑒𝑠 (𝑝𝑜𝑠𝑠𝑖𝑏𝑙𝑦 𝑎𝑏𝑏𝑟𝑖𝑔𝑒𝑑):
𝐅𝐞𝐚𝐭𝐮𝐫𝐞𝐬

* support remote snakefile via gh/gl shorthand: https://github.com/snakemake/snakemake/issues/4161

𝐁𝐮𝐠 𝐅𝐢𝐱𝐞𝐬

* remove leaked secrets in input source file display and ensure that wrapper scripts are properly fetched as GithubFile: https://github.com/snakemake/snakemake/issues/4225
* set log level accordingly when debug dag is set: https://github.com/snakemake/snakemake/issues/3778

𝐃𝐨𝐜𝐮𝐦𝐞𝐧𝐭𝐚𝐭𝐢𝐨𝐧

* add post-deploy example that ensures `.Renviron` is ignored for R package installations: https://github.com/snakemake/snakemake/issues/4140
* note about quoting dynamic resource statements with python code, quotes in example: https://github.com/snakemake/snakemake/issues/4214
* sort faq questions into sections: https://github.com/snakemake/snakemake/issues/4095

RE: https://mas.to/@nanopub/116714551434180700

One talk will be from me about #Snakemake and creating #nanopub reports. See you!

Beep, Beep - I am your friendly #Snakemake release announcement bot.

There is a new release of the 𝐒𝐧𝐚𝐤𝐞𝐦𝐚𝐤𝐞 𝐑𝐞𝐩𝐨𝐫𝐭𝐞𝐫 𝐏𝐋𝐮𝐠𝐢𝐧 𝐟𝐨𝐫 𝐍𝐚𝐧𝐨𝐩𝐮𝐛𝐬 systems. Its version now is 0.3.0!

Give us some time, and you will automatically find the plugin on #Bioconda and #Pypi.

This plugin is relevant for Snakemake users willing to publish
Software Metadata easyly.
The maintainer is here on Mastodon @rupdecat.

If you discover any issues, please report them on https://github.com/snakemake/snakemake-report-plugin-nanopub/issues.

See https://github.com/snakemake/snakemake-report-plugin-nanopub/releases/tag/v0.3.0 for details. Here is the header of the changelog:
𝑅𝑒𝑙𝑒𝑎𝑠𝑒 𝑁𝑜𝑡𝑒𝑠 (𝑝𝑜𝑠𝑠𝑖𝑏𝑙𝑦 𝑎𝑏𝑏𝑟𝑖𝑔𝑒𝑑):
𝐅𝐞𝐚𝐭𝐮𝐫𝐞𝐬

* stable graphviz format ([4d74582](https://github.com/snakemake/snakemake-report-plugin-nanopub/commit/4d74582346d4584ad05d485613f6cd9c7b3a6d2f))

𝐁𝐮𝐠 𝐅𝐢𝐱𝐞𝐬

* dependabot ([31d3f9d](https://github.com/snakemake/snakemake-report-plugin-nanopub/commit/31d3f9dbde338debd1dcea5ed987249dadcdb4c1))
* removed unused import ([e2c51da](https://github.com/snakemake/snakemake-report-plugin-nanopub/commit/e2c51da08efa0451cb918fad57188e45837f31b0))

𝐃𝐨𝐜𝐮𝐦𝐞𝐧𝐭𝐚𝐭𝐢𝐨𝐧

* updated readme and added test ([83bae80](https://github.com/snakemake/snakemake-report-plugin-nanopub/commit/83bae8027562190fff39ee010dfb26ceca1227d9))

BEEP, BEEP - I am your friendly #Snakemake release announcement bot.

There is a new release of Snakemake. Its version now is 9.22.0!

Give us some time, and you will automatically find it on #Bioconda and #Pypi.

The maintainer is here on Mastodon -
@johanneskoester .

If you discover any issues, please report them on https://github.com/snakemake/snakemake/issues.

See https://github.com/snakemake/snakemake/releases/tag/v9.22.0 for details. Here is the header of the changelog:
𝑅𝑒𝑙𝑒𝑎𝑠𝑒 𝑁𝑜𝑡𝑒𝑠 (𝑝𝑜𝑠𝑠𝑖𝑏𝑙𝑦 𝑎𝑏𝑏𝑟𝑖𝑔𝑒𝑑):
𝐅𝐞𝐚𝐭𝐮𝐫𝐞𝐬

* add semantic helper functions choose_file/choose_folder/choose_tmp and allow all semantic helper functions to be used when parsing resources: https://github.com/snakemake/snakemake/issues/3820
* add temp to default pathvars: https://github.com/snakemake/snakemake/issues/4108
* add workflow info to log: https://github.com/snakemake/snakemake/issues/4079
* support python 3.14: https://github.com/snakemake/snakemake/issues/3739

𝐁𝐮𝐠 𝐅𝐢𝐱𝐞𝐬

* Adapt for dataclasses._MISSING_TYPE replaced with sentinel in Python 3.15: https://github.com/snakemake/snakemake/issues/4211
* ensure that storage is not actually retrieved with --touch: https://github.com/snakemake/snakemake/issues/4212
* symlink to directory "has older modification time" than target: https://github.com/snakemake/snakemake/issues/3782, https://github.com/snakemake/snakemake/issues/3784

Beep, Beep - I am your friendly #Snakemake release announcement bot.

There is a new release of the 𝐒𝐧𝐚𝐤𝐞𝐦𝐚𝐤𝐞 𝐄𝐱𝐞𝐜𝐮𝐭𝐨𝐫 𝐏𝐥𝐮𝐠𝐢𝐧 𝐟𝐨𝐫 𝐒𝐋𝐔𝐑𝐌 systems. Its version now is 2.7.1!

Give us some time, and you will automatically find the plugin on #Bioconda and #Pypi.

This plugin is relevant for #HPC users using the #SLURM batch system.
The maintainers are here on Mastodon -
@rupdecat and @johanneskoester.

If you discover any issues, please report them on https://github.com/snakemake/snakemake-executor-plugin-slurm/issues.

See https://github.com/snakemake/snakemake-executor-plugin-slurm/releases/tag/v2.7.1 for details. Here is the header of the changelog:
𝑅𝑒𝑙𝑒𝑎𝑠𝑒 𝑁𝑜𝑡𝑒𝑠 (𝑝𝑜𝑠𝑠𝑖𝑏𝑙𝑦 𝑎𝑏𝑏𝑟𝑖𝑔𝑒𝑑):
𝐁𝐮𝐠 𝐅𝐢𝐱𝐞𝐬

* gpu submission: https://github.com/snakemake/snakemake-executor-plugin-slurm/issues/464

#Snakemake 9.21.1 has been released with lots of bug fixes. In addition, we had several more releases in the past 2 months with improvements for between workflow caching, profile handling, and semantic helper functions. And there is more in the pipeline!

https://snakemake.github.io