Giuseppe MichieliFeb 4, 2025
Development of avian #influenza A(#H5) virus #datasets for #Nextclade enables rapid and accurate clade assignment, https://etidiohnew.blogspot.com/2025/02/development-of-avian-influenza-ah5.html
Development of avian #influenza A(#H5) virus #datasets for #Nextclade enables rapid and accurate clade assignment

Giuseppe MichieliJan 12, 2025
Development of avian #influenza A(#H5) virus #datasets for #Nextclade enables rapid and accurate #clade assignment, https://etidiohnew.blogspot.com/2025/01/development-of-avian-influenza-ah5.html
Development of avian #influenza A(#H5) virus #datasets for #Nextclade enables rapid and accurate #clade assignment

Show threadNextstrainDec 15, 2023

Additionally, we've updated the Nextclade datasets to appropriately call clade 23G, 23H, and 23I viruses at clades.nextstrain.org.

If you use #Nextclade in the browser, make sure to reload the tab from time to time so that you get the most recent datasets.

8/9

Show threadDr Emma Hodcroft Aug 18, 2023

Finally, if you have a #SARSCoV2 sequencing pipeline that uses the #Nextclade CLI, please *pull the latest update*, as it includes BA.2.86 & will help you quickly ID sequences.
This is also updated online if you scan sequences there!
http://clades.nextstrain.org

9/9

Nextclade

Genetic sequence alignment, clade assignment, mutation calling, phylogenetic placement, and quality checks for SARS-CoV-2, Influenza (Flu), Monkeypox, Respiratory Syncytial Virus (RSV) and other pathogens

Show threadNextstrainAug 11, 2023

Additionally, we've updated Nextclade datasets to appropriately call clade 23C, 23D, 23E and 23F viruses at clades.nextstrain.org.

If you use #Nextclade in the browser, make sure to reload the tab from time to time so that you get the most recent datasets.

8/9