Mastodawn

Andrew Perry Dec 20

A beautiful wooden model of pancreatic trypsin inhibitor (5PTI, Wlodawer et al, 1984).

From: https://pmc.ncbi.nlm.nih.gov/articles/PMC1261423/

Andrew Perry May 10, 2024

Arthur Charpentier ⏚ 🇨🇦 🇯🇵May 10, 2024

“I went back to warn them, but they already knew and didn’t seem to care.” https://www.newyorker.com/cartoons/daily-cartoon/thursday-january-27th-time-machine ht @W_Lucht @martinanota

Daily Cartoon: Thursday, January 27th

“I went back to warn them, but they already knew and didn’t seem to care.”

The New Yorker

Andrew Perry Nov 23, 2022

So here are all the Alphafold2 forks/reimplementations/related-ideas that I'm aware of and still catching up on:

ColabFold: https://github.com/sokrypton/ColabFold

OpenFold: https://github.com/aqlaboratory/openfold

ESMFold: https://github.com/facebookresearch/esm

FastFold: https://github.com/hpcaitech/FastFold

OmegaFold: https://github.com/HeliXonProtein/OmegaFold

RoseTTAFold: https://github.com/RosettaCommons/RoseTTAFold

Have I missed any notable or interesting ones ?

GitHub - sokrypton/ColabFold: Making Protein folding accessible to all!

Making Protein folding accessible to all! Contribute to sokrypton/ColabFold development by creating an account on GitHub.

GitHub

Andrew Perry Nov 22, 2022

At the latest ARDC techtalk by @Sbollmann_MRI and Audrey Stott - "Containers for Scientific Software Distribution Service including security scanning and CVMFS"

Great proposal for providing a community-lead container build and distribution infrastructure for HPC in Australia.

Slides at: https://sites.google.com/ardc.edu.au/techtalk2020/talks (video later)

TechTalk2020-22 - Talks

Next meeting - Talk 18 - 22 Nov 22, 1.00pm AEDT Containers for Scientific Software Distribution Service including security scanning and CVMFS. Steffen Bollman, UQ and Audrey Stott, Pawsey. Sign up to the mailing list to get a calendar invite.