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Major updates to MLST analysis at One Codex: we’ve expanded to 100+ species, added fungal support, and integrated long-read sequencing compatibility.
Read more about our revamped characterization workflow: https://www.onecodex.com/blog/2026/01/05/comprehensive-and-accurate-bacterial-isolate-characterization-using-multi-locus-sequence-typing/
Researchers have created over 300k plots in One Codex since the launch of our data viz features 📊
We're adding lots of new functionality (including statistical analyses for alpha and beta diversity) to Custom Plots, and would love your input: what are the most common analyses you perform?
We’ve just released the biggest update ever to our Antimicrobial Resistance analysis! Here are some highlights:
📈 Over 8,500 markers across 59 gene classes - a 10x increase over the previous panel
🧬 Universal compatibility with short and long sequencing reads from Illumina, Oxford Nanopore, PacBio, and ThermoFisher
🦠 Support for alignment and SNP-based marker detection
Read more in our blog post at https://buff.ly/y4ZdqNe!
Our new AMR detection workflow is now available and features over 8,500 distinct AMR sequences from 59 drug classes, an order of magnitude more than our previous database! This new workflows covers a wide variety of antimicrobial classes and resistance mechanisms.
One Codex is heading back to Boston this week for the Microbiome Movement Drug Discovery Summit!
We’ll be giving a talk on FAIR (Findable, Accessible, Interoperable, and Reusable) data and the role of bioinformatics, as well as how building a FAIR data platform at your organization can enable and facilitate ML and AI methods for microbiome research.
