John M. Drake

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30 Following
14 Posts
Professor at the University of Georgia
Websitehttp://daphnia.ecology.uga.edu/drakelab/
GitHubhttps://github.com/jdrakephd

Excited to share our latest research on models of superspreading in epidemics, newly out in Mathematical Biosciences and Engineering

https://www.aimspress.com/article/doi/10.3934/mbe.2025039

Finite mixture models of superspreading in epidemics

Superspreading transmission is usually modeled using the negative binomial distribution, simply because its variance is larger than the mean and it can be long-tailed. However, populations are often partitioned into groups by social, behavioral, or environmental risk factors, particularly in closed settings such as workplaces or care homes. While heterogeneities in infectious histories and contact structure have been considered separately, models for superspreading events that include the joint effects of social and biological risk factors are lacking. To address this need, we developed a mechanistic finite mixture model for the number of secondary infections that unites population partitioning with individual-level heterogeneity in infectious period duration. We showed that the variance in the number of secondary infections is composed of both sources of heterogeneity: risk group structuring and infectiousness. We used the model to construct the outbreak size distribution and to derive critical thresholds for elimination resulting from control activities that differentially target the high-contact subpopulation vs. the population at large. We compared our model with the standard negative binomial distribution and showed that the tail behavior of the outbreak size distribution under a finite mixture model differs substantially. Our results indicate that even if the infectious period follows a bell-shaped distribution, heterogeneity in outbreak sizes may arise due to the influence of population risk structure.

Mathematical Biosciences and Engineering

Excited to announce our latest research in #PRSB on unsupervised learning to detect antigenic transitions in Influenza A (H3N2) viruses.

Read more here: https://royalsocietypublishing.org/doi/10.1098/rspb.2024.0790

#MachineLearning #Influenza #VaccineDevelopment #PublicHealth

How does #Ebola move from the bat species that are its natural reservoir into primate and human populations? Our latest research in #Ecography suggests that fig trees and #monkeys are a key part of the story. We hypothesize that seasonal rains induce fruiting, which then invite fruit-eating species including bats, monkeys, and people to forage in the same locations facilitating spillover of the virus from one species to another.

https://nsojournals.onlinelibrary.wiley.com/doi/10.1111/ecog.06950

Pleased to share our latest research in
#LancetPlanetaryHealth
on the intersections between climate change, biodiversity loss, and infectious diseases

https://www.sciencedirect.com/science/article/pii/S2542519624000214

3/3 Second, transmission thresholds are nonlinearly dependent on both vertebrate host availability and temperature, adding a new dimension to our understanding of disease spread dynamics.

Our work provides new insights into the factors influencing mosquito-borne diseases, emphasizing the need for integrated approaches in epidemiological modeling. Check out the full paper for a deep dive into our methods and results! #Epidemiology #PublicHealth #VectorBorneDiseases

2/3 First, vertebrate host availability can shift the thermal optimum of transmission by up to 5°C, highlighting the crucial interplay between host tolerance and temperature.

1/3 Excited to share my latest paper with Kyle Dahlin and colleagues on temperature-dependent models of mosquito-borne transmission. We've updated the classic Ross-MacDonald model to address its limitations and uncovered significant findings.

https://esajournals.onlinelibrary.wiley.com/doi/10.1002/ecm.1603

Excited to announce registration is now open for a symposium on "Viral Traits and Infectious Disease Emergence" to be held September 9-10, 2024 at the University of Georgia. Please join us! https://www.ceid.uga.edu/viraltraits2024/
Home - Viral Traits & Infectious Disease Emergence

Hybrid symposium on Viral Traits and Infectious Disease Emergence, September 9-10, 2024, Center for the Ecology of Infectious Diseases at the University of Georgia. The symposium aims to review of knowledge on viral traits and disease emergence and synthesize current knowledge and best practices for disease modeling through invited talks, round table discussions, and a poster session, facilitating the participation of both established and early-career disease ecology researchers.

Viral Traits & Infectious Disease Emergence
Pete Hudson speaking about preventing pandemics at the Center for the Ecology of Infectious Diseases and Odum School of Ecology

Enjoyed a great seminar today by Jenn Thompson on “Co-producing sustainable food systems: A transdisciplinary and participatory approach”

Here, Jenn reminds us that interdisciplinary advances occur in the spaces where we begin to get uncomfortable.

I wasn't familiar with the work of Freeth and Caniglia, but I look forward to learning more about it.