MetaNet: a scalable and integrated tool for reproducible omics network analysis https://www.biorxiv.org/content/10.1101/2025.06.26.661636v1?med=mas

Haplomatic: A Deep-Learning Tool for Adaptively Scaling Resolution in Genetic Mapping Studies https://www.biorxiv.org/content/10.1101/2025.06.25.661582v1?med=mas

DiPPER2 - a user-friendly pipeline for picking and evaluating taxon-specific PCR primers https://www.biorxiv.org/content/10.1101/2025.06.26.661695v1?med=mas

OocystMeter, a machine-learning algorithm to count and measure Plasmodium oocysts, reveals clustering patterns in the Anopheles midgut https://www.biorxiv.org/content/10.1101/2025.06.28.662088v1?med=mas

Design and Optimization of Multifunctional Peptide Candidates for Cosmeceutical Applications: Combining Anti-Inflammatory and Collagen-Boosting Properties https://www.biorxiv.org/content/10.1101/2025.06.26.661667v1?med=mas

Fundamental Limitations of Foundation Models in Single-Cell Transcriptomics https://www.biorxiv.org/content/10.1101/2025.06.26.661767v1?med=mas

Multimodal Benchmarking of Foundation Model Representations for Cellular Perturbation Response Prediction https://www.biorxiv.org/content/10.1101/2025.06.26.661186v1?med=mas

Molecular dynamics reveals a novel Regulatory Ca+2-Binding Site in the Mitochondrial Calcium Uniporter https://www.biorxiv.org/content/10.1101/2025.06.25.661581v1?med=mas

PatternExtract: A facile, scalable pipeline for point pattern generation from spatial imaging data https://www.biorxiv.org/content/10.1101/2025.06.25.661424v1?med=mas

EC-Bench: A Benchmark for Enzyme Commission NumberPrediction https://www.biorxiv.org/content/10.1101/2025.06.25.661207v1?med=mas