Wallace Marshall

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Professor at UCSF, electrical engineer turned cell biologist, wants to know how cells solve geometry problems
RT @takanobu_ka
“Immotile cilia mechanically sense the direction of fluid flow for left-right determination” published in #Science #AAAS. We answered the question that "How the embryo senses nodal flow and why only the L-side cilia can respond." Let me guide you! 1/n https://www.science.org/doi/10.1126/science.abq8148
@sengupta cool!!!!!
so who's ready for another year of doing science?
Wanted to share our recent paper on how a cell, Chlamydomonas, "knows" when its flagella are removed. When flagella are detached in this unicellular alga, they grow back in an hour, and while that happens a whole program of genes are turned on. Here we show that induction depends on intraflagellar transport, suggesting a model in which a repressor is sequestered in flagella when they are re-growing, and then accumulates to turn genes off as growth tapers off.
https://www.molbiolcell.org/doi/10.1091/mbc.E22-09-0444
Role of intraflagellar transport in transcriptional control during flagellar regeneration in Chlamydomonas

Biosynthesis of organelle precursors is a central part of the organelle size control problem, but what systems are required to control precursor production? Genes encoding flagellar proteins are upregulated during flagellar regeneration in Chlamydomonas, and this upregulation is critical for flagella to reach their final length, but it not known how the cell triggers these genes during regeneration. We present two models based on transcriptional repressor that is either produced in the flagellum, or else is produced in the cell body and sequestered in the growing flagellum. Both models lead to stable flagellar length control and can reproduce the observed dynamics of gene expression. The two models make opposite predictions regarding the effect of mutations that block intraflagellar transport (IFT). Using quantitative measurements of gene expression, we show that gene expression during flagellar regeneration is greatly reduced in mutations of the heterotrimeric kinesin-2 that drives IFT. This result is consistent with the predictions of the model in which a repressor is sequestered in the flagellum by IFT. Inhibiting axonemal assembly has much less effect on gene expression. The repressor sequestration model allows precursor production to occur when flagella are growing rapidly, representing a form of derivative control.

Molecular Biology of the Cell
@sethaxen yes indeed - all of the stories about their antics are, from what I have heard, 100% true! it also captures the spirit of the big debates at UCSF in the 80's and 90's about genetics vs biochemistry, which I think were very helpful in focusing people on the opportunities and limitations of different approaches. i.e. it wasn't about the fighting, it was about the ideas.
i wanted to share, for those who haven't seen them, two of my favorite essays about methods for determining molecular mechanics in biology through the twin approaches of genetics and biochemistry: the Salvation of Doug, by Bill Sullivan, and the Demise of Bill, by Doug Kellogg.

https://review.ucsc.edu/spring04/bio-debate.html
Review, Spring 2004