Alliance of Genome Resources

@AllianceGenome@genomic.social
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The Alliance of Genome Resources supports biological science via data integration, standardization of data models and interfaces, and unified outreach.

Find us at https://www.alliancegenome.org.

RE: https://genomic.social/@AllianceGenome/115883108547833326

ICYMI, this month's Alliance webinar, "MCP-What is it and what can it do for you?", presented by Lincoln Stein, is now on the Alliance YouTube channel.
https://www.youtube.com/watch?v=DELYj8BOpWk
Want to know about future or past webinars? Check the Alliance Event Calendar https://www.alliancegenome.org/event-calendar

RE: https://genomic.social/@AllianceGenome/115883108547833326

Please register by 11pm ET TONIGHT (1/14) to get the zoom link to hear Lincoln Stein give an introduction to model context protocols for AI agents TOMORROW (1/15, noon ET) https://tinyurl.com/4f9ycybt.

A schedule of upcoming webinars & recordings of past webinars is here https://www.alliancegenome.org/event-calendar

This month's Alliance webinar "MCP-What is it and what can it do for you?", presented by Lincoln Stein, will be Thurs. Jan. 15 at noon ET. To get the Zoom link, please register https://tinyurl.com/4f9ycybt by Thurs. Jan 14 (before 11:00pm ET).
Join us to learn about model context protocols for AI agents.
Alliance Of Genome Resources Event Registration

Webinar recordings are posted at https://www.youtube.com/@AllianceOfGenomeResources A schedule of future events is on the Alliance Events Calendar https://www.alliancegenome.org/event-calendar

Google Docs
Improved for Alliance v.8.3: The Alliance BLAST Service page https://www.alliancegenome.org/blastservice has been updated to include fly, worm, yeast, fungal, and rat BLAST services.
This sorting is preserved when one downloads the table data.

Improved in Alliance v. 8.3.0:

The gene page Expression ribbon and table have been updated to improve sorting features.
For example, the table is sorted by Location by default. If one instead sorts Assay, the other columns will also sort (by Location then Stage).

As a final nod to 2025, the Gene Ontology announces our latest paper in NARl! Updates include expanded ontology & annotations in metabolism, multi-org interactions, chromatin remodeling & more.

Also featuring our Functionome v2 and 1500+ GO-CAM pathway models! 🧬🧪

https://doi.org/10.1093/nar/gkaf1292

Other components of constructs, like fluorescent reporters and protein tags, have been added to the data for C. elegans transgenes (some other organisms had them already). The se components are displayed in the Expressed Components column, as well as in the Transgenic Constructs section of Alleles/Variants reports.

New in Alliance v8.3.0: The Transgene Alleles section of gene pages has been updated to include alleles in which the gene serves only as a regulatory region driving another component (such as a fluorescent tag or a binary driver like GAL4); previously such alleles weren't displayed on gene pages.

The components being driven by a gene's regulatory region are displayed in the Expressed Components column, as well as in the Transgenic Constructs section of Alleles/Variants reports.

The Alliance Mastodon account now has a feed on the Alliance News page https://www.alliancegenome.org/news
Alliance of Genome Resources