Fast calculation of tree rearrangement distances. For
unrooted trees: Subtree Prune and Regraft (SPR), Tree Bisection
and Reconnection (TBR), and Replug distances, using the
algorithms of Whidden and Matsen (2017)
. For rooted trees: rooted SPR
(rSPR) distance, using the fixed-parameter algorithms of
Whidden, Beiko, and Zeh (2013) .
