I recommend installing Google's Antigravity and digging into its temp files in the user folder. You'll find some interesting ideas on how to organize memory there (the memory structure consists of: Brain / Conversation / Implicits / Knowledge items / Artifacts / Annotations / etc.).

I'd also add that memory is best organized when it's "directed" (purpose-driven). You've already started asking questions where the answers become the memories (at least, you mention this in your description). So, it's really helpful to also define the structure of the answer, or a sequence of questions that lead to a specific conclusion. That way, the memories will be useful instead of turning into chaos.