James Ferguson Mar 25, 2025

I need a faster alignment Rust library than that in bio.

bio::alignment::pairwise::Aligner<F>::semiglobal

It's taking way too long and slowing things down.

Anyone got opinions on another lib?

EDIT: A Rust library

Show threadIgor Martayan
@Psy_Fer_ I can suggest https://github.com/RagnarGrootKoerkamp/astar-pairwise-aligner and https://github.com/Daniel-Liu-c0deb0t/block-aligner
Both are in Rust and extremely fast!
GitHub - RagnarGrootKoerkamp/astar-pairwise-aligner: A pairwise sequence aligner written in Rust

A pairwise sequence aligner written in Rust. Contribute to RagnarGrootKoerkamp/astar-pairwise-aligner development by creating an account on GitHub.

GitHub
Mar 25, 2025 at 12:14pmWeb