https://academic.oup.com/gbe/article/15/6/evad100/7189782

Living+evolving inside insect cells for millions of years can drive bacterial genomes to mind-boggling extremes. New paper in @GenomeBiolEvol asks what bacterial transcription looks like at the extremes of genome reduction (<200kb), genome fragmentation (40+ chromosomes/genomes!), and gene dosage imbalance (1:100+).

This is my first first-author paper and the first of my PhD w/ @mcsymbiont. I'm thrilled to have it finally out, + in one of my fav journals! Check it out!

No Transcriptional Compensation for Extreme Gene Dosage Imbalance in Fragmented Bacterial Endosymbionts of Cicadas

Abstract. Bacteria that form long-term intracellular associations with host cells lose many genes, a process that often results in tiny, gene-dense, and st

OUP Academic
@noahspencer @ehud @GenomeBiolEvol @mcsymbiont So, if I’m understanding correctly, this bacteria species has essentially split into several independent “species” that each only carry a subset of the total needed genome? Wow — is this common to see in these sorts of symbionts?
Distributed Adaptations: Can a Species Be Adapted While No Single Individual Carries the Adaptation?

Species’ adaptation to their environments occurs via a range of mechanisms of adaptation. These include genetic adaptations as well as non-traditional inheritance mechanisms such as learned behaviors, niche construction, epigenetics, horizontal gene transfer, and alteration of the composition of a host’s associated microbiome. We propose to supplement these with another modality of eco-evolutionary dynamics: cases in which adaptation to the environment occurs via what may be called a “distributed adaptation,” in which the adaptation is not conferred via something carried by an individual of the adapted species (as with genes, behavior, or associated microbes), but by some structural or compositional aspect of the population. Put differently, the adaptively relevant information cannot be reduced to information possessed by a single individual, whether genetic or otherwise. Rather, the adaptively relevant information is distributed, and is found strictly at the population level. While human culture is presumably such a case, as may be cases found in social insects, we want to suggest that there are other cases that belong to this category and to explore its evolutionary implications. In particular, we discuss the factors that affect whether adaptive information is stored in a distributed way, to what degree, and what kinds of adaptive information are most likely to be found in this modality of adaptation.

Frontiers

@ehud @michaelgemar @noahspencer @GenomeBiolEvol

That's an interesting idea, Ehud, but we actually think this phenomenon is either non-adaptive or perhaps maladaptive overall (although splitting itself may be due to positive selection at the level of symbiont). In this new paper, Noah shows that the symbiont is not responding (adapting) to splitting by changing transcription to compensate, and we have published other papers pointing to an overall deleterious outcome due to this process.