Richard A NicholsWant to estimate the proportion of the nuclear genome in your non-model organism that is mitochondrial inserts (or Wolbachia / plastid inserts etc) from low-coverage short-read data? Very pleased that this solution from Hannes' PhD work is out: http://doi.org/10.1111/1755-0998.13764
Angus Davison@RichardAlanNichols sounds useful - have been vaguely worrying about numt in my data but not gone beyond just thinking about it ... so this offers a practical solution
@snailman please let me know how you get on!