Egon Willighagensecond day of #lipidhack23 is about to start with a talk by #LipidMaps curator Matthew Conroy about "The What and the How of adding new lipids"
One of his slides. I wonder if DECIMER handles all of them correctly. cc @Kohulan #lipidhack23
full code example online at https://egonw.github.io/cdk-cxsmiles/liebisch.html #lipidhack23
cxsmiles = LMAbbrevTool.cxsmiles("CE 16:1")
mol1 = sp.parseSmiles(cxsmiles)
new DepictionGenerator()
.depict(mol1)
.writeTo("CE_16:1.svg");
I have extracted "lipids" from two articles now. Learning more and more about the Liebisch abbreviated notation. I am now trying if I can write a tool that converts the Liebisch notation to CXSMILES #lipidhack23
we just got our instructions, including a quick walkthrough of these two papers: https://doi.org/10.1194/jlr.S120001025 and the older https://doi.org/10.1194/jlr.M033506 #lipidhack23
first day of #lipidhack23 has started, in the outskirts of München, Helmholtz. We're going to hack up our lipid knowledge of model organisms
@TheLipidHoff #lipidhack23 is "Hackathon on data curation for model organsim" as posted on https://www.epilipid.net/events/
it's a bit running from meeting to meeting right now, but the #nanosolveit project meeting and #osf2023nl are only just over but already packing for #lipidhack23