Gokce Lab

@ozgungokce
280 Followers
614 Following
36 Posts
Genomics/bioinformatics group moving to Bonn UKB-DZNE ๐Ÿณ๏ธโ€๐ŸŒˆ๐Ÿดโ€โ˜ ๏ธ๐Ÿ‡จ๐Ÿ‡ณ๐Ÿ‡น๐Ÿ‡ท๐Ÿ‡ซ๐Ÿ‡ท๐Ÿ‡ณ๐Ÿ‡ช๐Ÿ‡ฉ๐Ÿ‡ช. Join our group
Websitehttps://www.gokcelab.com
twitter@ozgungokce
Marking International Day of Women & Girls in Science, I took an implicit bias test: https://implicit.harvard.edu/implicit/Study?tid=-1 My results showed a slight bias associating men with career & women with family. Let's all strive for improvement starting from ourselves. #WomenInScience
Take a Test

Charting a New Course Through the Injured Brain. https://the-scientist.com/news/charting-a-new-course-through-the-injured-brain-71588 Many thanks to @RashmiShivni for covering our latest study!
Charting a New Course Through the Injured Brain

A state-of-the-art technique helps scientists map out tissue at the single cell level after a demyelinating brain injury.

The Scientist Magazineยฎ
Come see the latest @seguralab research! Want to know how to grow vessels, control macrophage phenotype, or deliver genes from MAP? Come see my labโ€™s presentations!!
Brexit causes collapse in European research funding for Oxbridge

Oxford and Cambridge universities, once given more than ยฃ130m a year in total by European research programmes, are now getting ยฃ1m annually between them

The Guardian
Tissue-resident memory T cells in the multiple sclerosis brain and their relationship to Epstein-Barr virus infected B cells https://www.sciencedirect.com/science/article/pii/S016557282300022X

RT @AlexYermanos
Sharing our new publication in Acta Neuropathologica investigating the selection of virus-specific, autoreactive B cells and local tolerance in the central nervous system! Fun collab w/ @ReddyLab_ETHZ @LabOxenius @merkler_lab @edubeltran_lab et al

https://link.springer.com/article/10.1007/s00401-023-02537-5

Persistent virus-specific and clonally expanded antibody-secreting cells respond to induced self-antigen in the CNS - Acta Neuropathologica

B cells contribute to the pathogenesis of both cellular- and humoral-mediated central nervous system (CNS) inflammatory diseases through a variety of mechanisms. In such conditions, B cells may enter the CNS parenchyma and contribute to local tissue destruction. It remains unexplored, however, how infection and autoimmunity drive transcriptional phenotypes, repertoire features, and antibody functionality. Here, we profiled B cells from the CNS of murine models of intracranial (i.c.) viral infections and autoimmunity. We identified a population of clonally expanded, antibody-secreting cells (ASCs) that had undergone class-switch recombination and extensive somatic hypermutation following i.c. infection with attenuated lymphocytic choriomeningitis virus (rLCMV). Recombinant expression and characterisation of these antibodies revealed specificity to viral antigens (LCMV glycoprotein GP), correlating with ASC persistence in the brain weeks after resolved infection. Furthermore, these virus-specific ASCs upregulated proliferation and expansion programs in response to the conditional and transient induction of the LCMV GP as a neo-self antigen by astrocytes. This class-switched, clonally expanded, and mutated population persisted and was even more pronounced when peripheral B cells were depleted prior to autoantigen induction in the CNS. In contrast, the most expanded B cell clones in mice with persistent expression of LCMV GP in the CNS did not exhibit neo-self antigen specificity, potentially a consequence of local tolerance induction. Finally, a comparable population of clonally expanded, class-switched, and proliferating ASCs was detected in the cerebrospinal fluid of relapsing multiple sclerosis (RMS) patients. Taken together, our findings support the existence of B cells that populate the CNS and are capable of responding to locally encountered autoantigens.

SpringerLink

Yapici lab ๐Ÿ–จ๏ธ๐Ÿ”ฅ off the press!!
The story of novel visual feedback neurons make sure that males flies court nice nโ€™ steady ๐Ÿ˜Ž

Kudos to the awe-inspiring twitterless first-author Yuta, and Nilay (also twitterless now!) & to @XinyueCui , @HaeinKim6๐ŸŽ‰๐ŸŽ‰

https://www.biorxiv.org/content/10.1101/2023.01.25.525544v1

My first post on Mastodon after a whole lot of lurking and boosting, so I'm treating this as a mini #introduction for myself

I'm an #immunology PhD candidate at #ColumbiaUniversity medical center, and we just published a study of #TissueSpecifity of human #Tcell identity and clonal expansion in barrier sites, using #CyTOF, #scRNAseq, and #TCR #sequencing!

https://www.nature.com/articles/s41590-022-01395-9

Tissue adaptation and clonal segregation of human memory T cells in barrier sites - Nature Immunology

Farber and colleagues examine the phenotypic, transcriptomic, clonal, and functional differences between tissue-resident T cells in various barrier tissue sites relative to T cells in lymphoid organs and circulation in humans.

Nature

#migration#re-Introduction.

I'm a theoretical neuroscientist at U Mainz Medical Center and co-affiliated with U Bonn Medical center. Primary focus on cortical circuits, their network activity, synaptic plasticity and protein dynamics in dendrites. Broadly interested how circuits learn e.g. neuro/AI interface and want to understand how neural networks compute, both algorithmically and intracellularly. Occational posts about societal and academic issues.

RT @[email protected]

RESEARCH NEWS: New stats test just published from @[email protected] for distinguishing biological variation from technical variation in #singlecell datasets. See the thread for links to a tutorial, scripts and visualisation tools.
๐Ÿงตhttps://twitter.com/LabListon/status/1615673972850413569

๐Ÿฆ๐Ÿ”—: https://twitter.com/BabrahamInst/status/1616042920284389377

Adrian Liston on Twitter

โ€œWe have an exciting #computational paper out in @CellRepMethods. Ever use a #tSNE or #UMAP in #scSeq, #flowcytometry or #masscytometry? It doesn't have to be just a pretty picture anymore - we've developed a statistical test to check for differences. 1/6 https://t.co/rV27mf52Ubโ€

Twitter