| job | self-employed |
| Drink | Coffee |
| Software | Open source |
| Plumbing | Snakemake |
Maarten Kooyman
@maartenk
- 32 Followers
- 158 Following
- 41 Posts
Bioinformatics and genetic epidemiology. Run except jobs also on sneakers, launch himself on 🛹 and cycles to work.
On my wat to the kick off
Original post: https://bsky.app/profile/did:plc:sj67pizxf47gafiobp33zd7u/post/3lsg6b5awv225
Oh, in this case
input:
acient(scriptname)
if the script name is the same might work
KNMIDe broncode van de KNMI-app is nu vrij beschikbaar op GitLab: https://gitlab.com/KNMI-OSS/KNMI-App. Dit betekent dat iedereen de broncode kan lezen, aanpassen en verpreiden. Opensourcesoftware is belangrijk voor meer openheid in ICT-systemen van de Rijksoverheid. #opensourceweek
Christian MeestersI'm going to give this course on "Building HPC-Compliant Snakemake Data Analysis Workflows" in the context of the German association for High Performance computing in Mainz, Germany. It is a 2 day course, 29 Jan 2025 → 30 Jan 2025.
The course is intented for ALL interested in large scale data analysis.
If you are interested, sign up.
Note, that the same course will be in Dresden in February 2025.
Building HPC-Compliant Snakemake Data Analysis Workflows
Overview This tutorial equips participants with the essential skills to design and implement High-Performance Computing (HPC) compliant data analysis workflows using the Snakemake workflow management system. Through hands-on exercises and practical demonstrations, attendees will learn how to harness the power of this workflow manager to utilize HPC resources effectively and ensure reproducibility in their data analysis workflows. The Snakemake workflow system is widely used in...
Julia Evansfor teachers who are interested in using my zines in your class but don't have a budget to buy materials:
you can buy 1 copy at the personal rate, and print and give away as many copies as you want to your students (please do not distribute PDF copies of the zine though, only print copies)
if you do this, let me know! I love to hear about how people are using the zines
Johannes Köster@vsoch
and me are intensively working on Snakemake 8.0. Check out the exciting details here:
https://github.com/snakemake/snakemake/issues/2409
and me are intensively working on Snakemake 8.0. Check out the exciting details here:
https://github.com/snakemake/snakemake/issues/2409
Announcement: Snakemake 8.0 released, including the removal of deprecated syntax · Issue #2409 · snakemake/snakemake
Update: Snakemake 8.0 has been released on Dec 20, 2023! We keep this issue as it outlines the roadmap for some features that have been postponed to Snakemake 8.x. Important: Read the migration gui...
Lisa DeBruine 🏳️🌈This is such a nice solution to R package versioning that I didn't know about until today! #rstats
[108] MRAN is Dead, long live GRAN - Data Colada
Microsoft has been making daily copies of the entire CRAN website of R packages since 2014. This archive, named MRAN, allows installing older versions of packages, which is valuable for reproducibility purposes. The 15,000+ R packages on CRAN are incessantly updated. For example, the package tidyverse depends on 109 packages; these packages accumulate 63 updates, just...