TreeProfiler: large-scale metadata profiling along gene and species trees https://academic.oup.com/mbe/article/43/2/msag028/8450827
Javier del Campo
@fonamental
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Group leader at the Institut de Biologia Evolutiva (CSIC- UPF) & Adjunct at the Rosenstiel School. Microbial Ecology & Evolution 🔬🌍🧫🧬 🪸 PR2 database Coordinator #corals #symbiosis #protists
White syndrome dynamics in Porites cylindrica: interactions among eutrophication, host structure, and microbial communities https://www.biorxiv.org/content/10.64898/2026.02.04.703833v1.full #corals #microbiome #holobiont
Protozoan predation selects for key symbiotic traits in an environmentally transmitted beneficial symbiosis https://www.biorxiv.org/content/10.64898/2026.02.25.707974v1.full #symbiosis #protists
OrthoGarden: a Pipeline for Propagating Phylogenetic Trees for Non-Model Organisms from Short Reads and de novo Genome Assemblies https://academic.oup.com/mbe/advance-article/doi/10.1093/molbev/msag053/8500904
Widespread symbiosis of ciliate epibionts colonizing gills of shrimps inhabiting vents and seeps across the Pacific Ocean biorxiv.org/content/10.64898/2026.02.27.708428v1.full #symbiosis #protists
A Comparative Analysis of Long-Term Effective Population Sizes Across Eukaryotes https://onlinelibrary.wiley.com/doi/10.1111/mec.70265
Genome modelling and design across all domains of life with Evo 2 https://www.nature.com/articles/s41586-026-10176-5
High-quality metagenome assembly from nanopore reads with nanoMDBG https://www.nature.com/articles/s41467-026-69760-y
High-quality metagenome assembly from nanopore reads with nanoMDBG - Nature Communications
Benoit et al. present nanoMDBG, a scalable metagenome assembler for the latest ONT long reads, developed by adding error correction to metaMDBG. They demonstrate superior performance to the state-of-the-art and equivalent results to PacBio HiFi reads.
Spatial transcriptomics maps host–gut microbiome biogeography at high resolution https://www.nature.com/articles/s41564-026-02286-7 #microbiome
Planetary microbiome structure and generalist-driven gene flow across disparate habitats https://www.sciencedirect.com/science/article/pii/S0092867425015004 #microbiome
