#Annoplot #dataviz development has been temporarily suspended as of October, but for maintenance.

December maintenance included tweaking legend, ancestry in legend footnotes, and data import.

Work in November consisted primarily of work on #Buoy:

https://hcommons.social/@beadsland/115743279428734786

Now also on hold following multiple household emergencies.

Ultimate plan, after finishing up buoy, is to resume overdue refactoring of tiop libraries for variants #datavis chart, and then finally refactoring legacy levels chart into tiop and #Annoplot library.

At some point between now and the heat death of the universe, may even write up style guide and publish Annoplot under some license or another.

Variants script has been revised to better represent messier than usual #CDC data.

Most recent dataset, updated yesterday, shows three XFG subvariants, broken out two months back, together outpacing growth of parent and remaining siblings.

Meanwhile, Nimbus 1.8.1 / PQ family still holding out at near a twelfth of total estimated share.

Note that, in absence of robust data from states, CDC has given up modeling historical estimates, instead giving only shares of reported sequences.

Raj's dashboard, updated three weeks ago, showed Stratus dynasty with diversified XFG.3 family at plurality, accounting for still over a fifth of all samples, with XFG.14 already over a tenth.

GISAID data for the most recent three-plus-week period was dominated by paltry submissions from New York (146 sequences), followed by Minnesota (129), California (39), Illinois (38), Massachusetts (33), and Nebraska (27).

❖ #ThisIsOurPolio #variants #CovidIsNotOver #dataviz #datavis

Chart and #annoplot library now further revised to more fully address sparsity of #CDC data.

Most recent dataset, updated Friday, shows four XFG lineages, reflecting variants broken out by CDC in recent months, together outpacing growth of parent and remaining siblings.

Meanwhile, Nimbus 1.8.1 / PQ family still holding out at near a twelfth of total estimated share.

Note that, in absence of robust data from states, CDC has given up modeling historical estimates, instead giving only shares of reported sequences.

Raj's dashboard, updated three weeks ago, showed Stratus dynasty with diversified XFG.3 family at plurality, accounting for still over a fifth of all samples, with XFG.14 already over a tenth.

GISAID data for the most recent three-plus-week period was dominated by paltry submissions from New York (146 sequences), followed by Minnesota (129), California (39), Illinois (38), Massachusetts (33), and Nebraska (27).

❖ #ThisIsOurPolio #variants #CovidIsNotOver #dataviz #datavis

Raj's dashboard, updated yesterday, shows Stratus dynasty diversifying, with Stratus-Eleventy XFG.1.1 and first child, RP, approaching a sixth share of sequences, while XFG.14 line holds below a tenth.

That said, GISAID data for the two weeks and change at the end of the most recent reporting period was dominated by paltry submissions from Nebraska (146 sequences), Wisconsin (140), Minnesota (128), Colorado (122), New York (91) and Illinois (78).

Most recent #CDC dataset, updated late January, showed four XFG lineages, reflecting variants broken out by CDC in recent months, together outpacing growth of parent and remaining siblings and niblings.

Meanwhile, Nimbus 1.8.1 / PQ family still holds out at near a twelfth of total estimated share.

Note that, in absence of robust data from states, CDC has given up modeling historical estimates, instead giving only shares of reported sequences.

❖ #ThisIsOurPolio #variants #CovidIsNotOver #dataviz #datavis

#Annoplot #dataviz development was briefly resumed this month to implement more dynamism in generation of legends. Previous status found here:

https://beige.party/@beadsland/115902402815167705

As Voices of Solaria discord server has been deleted, talky bot project has been retired, dropping total line count by a little more than 800. Nonetheless, another two hundred or so lines have been added through work on Annoplot and chart scripts, including:

• revisions to variants parentage tracing, tree normalization and bundling logic and legend subheaders

• providing for complete removal of all helper artists when removing legend

• reworking of legend build process to dynamically reconfigure until fits available space

• tweaks to legend title wrapping, tile emboss treatments, organization and naming of bubbles

• improvements to process of ancestry digging for footnotes and determining footnote candidates

• updates to devpie (this #datavis) mirrored legends, to take advantage of dynamic legend build process

Most recent #CDC dataset, updated yesterday, shows five XFG lineages, reflecting variants broken out by CDC in recent months, together squeezing out patriarch and remaining siblings, cousins & niblings.

Meanwhile, Nimbus 1.8.1 / PQ family, previously shown as in decline relative to XFG dynasty, is now shown as rapidly gaining share.

Note that, in absence of robust data from states, CDC has given up modeling historical estimates, instead giving only shares of reported sequences.

Raj's dashboard, updated two week ago, showed Stratus dynasty diversifying, with Stratus-Eleventy XFG.1.1 as first child, RP, approached sixth share of sequences, while XFG.14 line holds below a tenth.

That said, GISAID data for the two weeks and change at the end of the most recent reporting period was dominated by paltry submissions from Nebraska (146 sequences), Wisconsin (140), Minnesota (128), Colorado (122), New York (91) and Illinois (78).

❖ #ThisIsOurPolio #variants #CovidIsNotOver #dataviz #datavis

#Annoplot #dataviz has had only minor maintenance this month. Previous status found here:

https://beige.party/@beadsland/116049587908706944

Maintenance included diagnostic logging and further tweaks to bundling and color assignments, in support of dynamic legend pruning; also expansion of criteria and squishing a one-line bug for footnotes.

Root level scripting included a rough plot of incarcerated populations by census block record:

https://beige.party/@beadsland/116125341132396326

This was restricted to a single root level script, not presently reliant on Annoplot library, and thus did not appreciably increase line count. Eventually this will be transitioned over to Annoplot, in the course of prototyping new geographical charting #datavis.

Most recent #CDC dataset, updated yesterday, shows now seven XFG lineages, including recombinant XFY. These reflect strains as broken out by CDC in recent months, together squeezing out patriarch and remaining siblings, cousins & niblings.

Meanwhile, Nimbus 1.8.1 / PQ family, is presently shown as holding out relative to XFG dynasty.

Note that, in absence of robust data from states, CDC has given up modeling historical estimates, instead giving only shares of reported sequences.

Raj's dashboard, updated six weeks ago, showed Stratus dynasty diversifying, with Stratus-Eleventy XFG.1.1 as first child, RP, approached sixth share of sequences, while XFG.14 line held below a tenth.

That said, GISAID data for the two weeks and change at the end of the most recent reporting period was dominated by paltry submissions from Nebraska (146 sequences), Wisconsin (140), Minnesota (128), Colorado (122), New York (91) and Illinois (78).

❖ #ThisIsOurPolio #variants #CovidIsNotOver #dataviz #datavis

Variants chart script has been revised. Bundling logic included a rule that was privileging Stratus XFG lineages.

Most recent #CDC dataset, updated yesterday, shows two Stratus XFG variants gaining ground against their dynastic cousins.

Meanwhile, Nimbus 1.8.1 / PQ family also gains share, lead by the XFY recombinant with XFG.5.1.

Note that, in absence of robust data from states, CDC has given up modeling historical estimates, instead giving only shares of reported sequences.

Raj's dashboard, updated six weeks ago, showed Stratus dynasty diversifying, with Stratus-Eleventy XFG.1.1 as first child, RP, approached sixth share of sequences, while XFG.14 line held below a tenth.

That said, GISAID data for the two weeks and change at the end of the most recent reporting period was dominated by paltry submissions from Nebraska (146 sequences), Wisconsin (140), Minnesota (128), Colorado (122), New York (91) and Illinois (78).

❖ #ThisIsOurPolio #variants #CovidIsNotOver #dataviz #datavis