#qpdf 12.3.0 was released a week ago and it looks like there is an incompatibility or bug which renders PDF Arranger useless (you can't save your results).
Workaround: Downgrade (or don't upgrade) your qpdf. The flatpak should also work fine if that is an option for you.
qpdf is a great library and well maintained by the way, I'm sure we'll have this resolved very soon.