sport of sacred spherical cowsNov 9, 2024

NCHS estimates of #LongCovid—based on Household Pulse Survey.

Chart now reflects Long Covid rates in children equal to those in adults.

Lower "Living with" figure follows changed question format.

Census has yet to announce next round of data—HPS website hasn't been updated since July.

#ThisIsOurPolio #CountLongCovid #CovidIsNotOver #MassDisablingEvent

[This is first toot of periodically refreshed thread, providing various dataviz of ongoing #pandemic.]

Last month: https://hcommons.social/@beadsland/113251340407517371

sport of sacred spherical cows (@[email protected])

Attached: 1 image NCHS estimates of #LongCovid—based on Household Pulse Survey. Weighted response rate lowest since Oct 2022. Next release date unknown. Presumably Nov. Chart now reflects Long Covid rates in children equal to those in adults. Lower "Living with" figure follows changed question format. #ThisIsOurPolio #CountLongCovid #CovidIsNotOver #MassDisablingEvent [This is first toot of periodically refreshed thread, providing various dataviz of ongoing #pandemic.] Last week: https://hcommons.social/@beadsland/113127006354380762

hcommons.social
Show threadsport of sacred spherical cowsNov 9, 2024

In Aug, summer FLiRT wave receded into S:F546L soup. Sept FLuQE wavelet matured into Oct MC wave. Now that #CDC has corrected Friday's public data, we see XEC—spawn of FLiRT KS.1.1 & FLuQE KP.3.3—poised to displace MC in November.

Meanwhile, FLiRT LB.1.3.1 has a new alias. We're in the second half of the alphabet.

Latest GISAID is sparse, so significance of MC.10 and LF.1.7 likely anomalous.

❖ #ThisIsOurPolio #Covid #Covid19 #SARS2 #variants #CovidIsNotOver #CovidIsAirborne #dataviz #datavis

Show threadsport of sacred spherical cowsNov 9, 2024

#CDC regional map is borked.

300-sequences threshold for reporting has been "two weeks ending 9/14" for six weeks now. In that time, regions meeting threshold went from 3 of 10, to 5, now to one.

Mantissa was dropped on bar chart two weeks ago.

KP.3.1.1 / MC holds a little more than half share in NY/NJ region; XEC is at quarter share.

[For color key, see: https://covid.cdc.gov/covid-data-tracker/#variant-proportions]

❖ #ThisIsOurPolio #Covid #Covid19 #SARS2 #CDC #variants #CovidIsNotOver #CovidIsAirborne #WearAMask #BetterMasks

COVID Data Tracker

CDC’s home for COVID-19 data. Visualizations, graphs, and data in one easy-to-use website.

Centers for Disease Control and Prevention
Show threadsport of sacred spherical cowsNov 9, 2024

Very sparse GISAID data for late October shows FluQE31 KP.3.1.1 / MC and children down to just over half of all sequences.

FLiRT KS.1.1 / FLuQE KP.3.3 hybrid XEC now near one in eight.

JN.1 FLiRT variants LB.1 & LF.*, and FDA's vaccine target KP.2, hang on—yet losing ground.

Per previous analysis, common mutations mean that LB.1 & KP.3 both closer to KP.2 than WHO vaccine target JN.1:

https://disabled.social/@beadsland/112738436725849215

❖ #ThisIsOurPolio #Covid #Covid19 #SARS2 #variants #CovidIsNotOver #CovidIsAirborne

"You do you" is Eu-gen-ics. (@[email protected])

Food for thought: LB.1 was third of two-weeks old New York/New Jersey estimate; roughly one-in-five in neighboring Mid-Atlantic and New England. That said, LB.1 has two mutations in common with its fellow FLiRT variant, and second-guess vaccine target, KP.2, such that LB.1, like KP.3, is only two steps removed from KP.2. However, in a scenario where, as an example, a non-KP SLip lineage picked up S:Q493E, joining KP.3 as another FLuQE, then JN.1, not KP.2, would be the closer vaccine target.

disabled.social
Show threadsport of sacred spherical cowsNov 10, 2024

Once again, have only had opportunity to add hundred or so lines to #AnnoPlot project since the last update:

https://hcommons.social/@beadsland/113218241027273518

In our post-data era, only variants #dataviz is still actively being updated.

Maintenance includes: cosmetic tweaks to bubbles and embossing; tweaks to label order, bundle logic, and legend families; debugging cluster and recombinants parent tracing; & general refactoring.

Unfortunately, ongoing fires in personal life means little time for #datavis programming.

sport of sacred spherical cows (@[email protected])

Attached: 2 images Have only had opportunity to add hundred or so lines to the #AnnoPlot project since the last update: https://disabled.social/@beadsland/112897038827615226 Most of that was experimentation with pyrlang under bots/. (First step in developing language paradigm for a propinquity-based social media platform.) Other work incl debugging egregious cosmetic issues with bubble chart layout, tile embossing & legend labels in variants #dataviz. Unfortunately, ongoing fires in personal life means little time for #datavis programming.

hcommons.social
Show threadsport of sacred spherical cowsNov 15, 2024

In Aug, summer FLiRT wave receded into S:F546L soup. Sept FLuQE wavelet matured into Oct MC wave. With #CDC correction to last week's public data, we see XEC—spawn of FLiRT KS.1.1 & FLuQE KP.3.3—poised to displace MC in Nov.

Meanwhile, FLiRT LB.1.3.1 has new alias. We're in second half of alphabet.

Got new GISAID data yesterday, showing no significant variants not otherwise broken out by CDC.

❖ #ThisIsOurPolio #Covid #Covid19 #SARS2 #variants #CovidIsNotOver #CovidIsAirborne #dataviz #datavis

Show threadsport of sacred spherical cowsNov 15, 2024

Updated GISAID data for late October shows FluQE31 KP.3.1.1 / MC and children were down to just over half of all sequences.

FLiRT KS.1.1 / FLuQE KP.3.3 hybrid XEC at over one in seven.

JN.1 FLiRT variants LB.1 & LF.*, and FDA's vaccine target KP.2, hang on—yet losing ground.

Per previous analysis, common mutations mean that LB.1 & KP.3 both closer to KP.2 than WHO vaccine target JN.1:

https://disabled.social/@beadsland/112738436725849215

❖ #ThisIsOurPolio #Covid #Covid19 #SARS2 #variants #CovidIsNotOver #CovidIsAirborne

"You do you" is Eu-gen-ics. (@[email protected])

Food for thought: LB.1 was third of two-weeks old New York/New Jersey estimate; roughly one-in-five in neighboring Mid-Atlantic and New England. That said, LB.1 has two mutations in common with its fellow FLiRT variant, and second-guess vaccine target, KP.2, such that LB.1, like KP.3, is only two steps removed from KP.2. However, in a scenario where, as an example, a non-KP SLip lineage picked up S:Q493E, joining KP.3 as another FLuQE, then JN.1, not KP.2, would be the closer vaccine target.

disabled.social
Show threadsport of sacred spherical cowsNov 23, 2024

In August, summer FLiRT wave receded into S:F546L soup. Sept FLuQE wavelet matured into Oct MC wave. Now, XEC—spawn of FLiRT KS.1.1 & FLuQE KP.3.3—poised to displace MC as we enter December.

Meanwhile, FLiRT LB.1.3.1 has new alias. We're in second half of alphabet.

Latest GISAID data sparse, even after Raj's update today, so significance of dagger-variants should be taken with grain of salt.

❖ #ThisIsOurPolio #Covid #Covid19 #SARS2 #variants #CovidIsNotOver #CovidIsAirborne #dataviz #datavis

Show threadsport of sacred spherical cows

#CDC regional map finally moves beyond reporting threshold for "two weeks ending 9/14". Only one region meets new, late Oct, threshold.

Mtn/Dakotas has XEC nearly at parity with KP.3.1.1 / MC, both at less than half share.

Given paucity of data reflected here, expect national Nowcast estimates for November to be revised significantly.

[For color key, see: https://covid.cdc.gov/covid-data-tracker/#variant-proportions]

❖ #ThisIsOurPolio #Covid #Covid19 #SARS2 #CDC #variants #CovidIsNotOver #CovidIsAirborne #WearAMask #BetterMasks

COVID Data Tracker

CDC’s home for COVID-19 data. Visualizations, graphs, and data in one easy-to-use website.

Centers for Disease Control and Prevention
Nov 23, 2024 at 4:07amWeb
Show threadsport of sacred spherical cowsNov 23, 2024

Updated GISAID data for early Nov shows FluQE31 KP.3.1.1 / MC fam down to just over half of all sequences.

FLiRT KS.1.1 / FLuQE KP.3.3 hybrid XEC approached one in five.

JN.1 FLiRT variant LB.1 matured into NL lineage—while rest of the FLiRT cluster continues to lose ground.

Per previous analysis, common mutations mean that LB.1 & KP.3 both closer to KP.2 than WHO vaccine target JN.1:

https://disabled.social/@beadsland/112738436725849215

❖ #ThisIsOurPolio #Covid #Covid19 #SARS2 #variants #CovidIsNotOver #CovidIsAirborne

"You do you" is Eu-gen-ics. (@[email protected])

Food for thought: LB.1 was third of two-weeks old New York/New Jersey estimate; roughly one-in-five in neighboring Mid-Atlantic and New England. That said, LB.1 has two mutations in common with its fellow FLiRT variant, and second-guess vaccine target, KP.2, such that LB.1, like KP.3, is only two steps removed from KP.2. However, in a scenario where, as an example, a non-KP SLip lineage picked up S:Q493E, joining KP.3 as another FLuQE, then JN.1, not KP.2, would be the closer vaccine target.

disabled.social
Show threadsport of sacred spherical cowsDec 2, 2024

In August, summer FLiRT wave receded into S:F546L soup. Sept FLuQE wavelet matured into Oct MC wave. Now, XEC—spawn of FLiRT KS.1.1 & FLuQE KP.3.3—displaces MC down to second FLuQE wavelet.

Meanwhile, FLiRT LB.1.3.1 has new alias. We're in second half of alphabet.

Latest GISAID data sparse, even after Raj's update today, so significance of dagger-variants should be taken with grain of salt.

❖ #ThisIsOurPolio #Covid #Covid19 #SARS2 #variants #CovidIsNotOver #CovidIsAirborne #dataviz #datavis

Show threadsport of sacred spherical cowsDec 2, 2024

Updated GISAID data for mid Nov has FluQE31 KP.3.1.1 / MC fam down to just over two fifths of all sequences

FLiRT KS.1.1 / FLuQE KP.3.3 hybrid XEC over one in four.

JN.1 FLiRT variants LB.1 has matured into NL lineage—while rest of the FLiRT cluster continues to lose ground.

Per previous analysis, common mutations mean that LB.1 & KP.3 both closer to KP.2 than WHO vaccine target JN.1:

https://disabled.social/@beadsland/112738436725849215

❖ #ThisIsOurPolio #Covid #Covid19 #SARS2 #variants #CovidIsNotOver #CovidIsAirborne

"You do you" is Eu-gen-ics. (@[email protected])

Food for thought: LB.1 was third of two-weeks old New York/New Jersey estimate; roughly one-in-five in neighboring Mid-Atlantic and New England. That said, LB.1 has two mutations in common with its fellow FLiRT variant, and second-guess vaccine target, KP.2, such that LB.1, like KP.3, is only two steps removed from KP.2. However, in a scenario where, as an example, a non-KP SLip lineage picked up S:Q493E, joining KP.3 as another FLuQE, then JN.1, not KP.2, would be the closer vaccine target.

disabled.social
Show threadsport of sacred spherical cowsDec 3, 2024

Have been only debug maintenance mode since our last update. No appreciable increase in #AnnoPlot line count:

https://hcommons.social/@beadsland/113456689508810628

In our post-data era, only variants #dataviz is still actively being updated.

Maintenance includes: managing GISAID data imports, further refining legend criteria, revisions & corrections to naming tables, & properly pinning subvariants of clusters to progenitor lineages.

Unfortunately, ongoing fires in personal life means little time for #datavis programming.

sport of sacred spherical cows (@[email protected])

Attached: 1 image Once again, have only had opportunity to add hundred or so lines to #AnnoPlot project since the last update: https://hcommons.social/@beadsland/113218241027273518 In our post-data era, only variants #dataviz is still actively being updated. Maintenance includes: cosmetic tweaks to bubbles and embossing; tweaks to label order, bundle logic, and legend families; debugging cluster and recombinants parent tracing; & general refactoring. Unfortunately, ongoing fires in personal life means little time for #datavis programming.

hcommons.social