New Title Alert: Protenix- a trainable PyTorch reproduction of AlphaFold 3.

Learn more here: https://github.com/bytedance/Protenix

#SBGrid #Software #StructuralBiology

New Title Alert: smap- a tool for detecting unlabeled macromolecules in 2D Cryo-EM images of cells that uses high-resolution template matching.

Learn more here: https://github.com/jpr-smap/smap_v2.1

#SBGrid #Software #StructuralBiology

>> ...

NMR Online - ELEMENTS: The FREE web NMR spectroscopy software suite

■ v1.00 // REUBEN

-- [coming soon]

Even though we've taken a break from #NMRchat, we've not stopped making connections and engineering our free #NMR software suite.

! More news soon.

_ end transmission //

>> ...

#bioinformatics #biology #biochemistry #biophysics #chemistry #CompChem #metabolomics #NMROnline #physics #spectroscopy #StructuralBiology

New Title Alert: MPicker- a tool for membrane flatten and visualization.

Learn more here: https://thuem.net/software/mpicker/overview.html

#SBGrid #Software #StructuralBiology

New Title Alert: warp-tm-vis- a tool to visualize template matching results from Warp.

Learn more here: https://github.com/warpem/warp-tm-vis

#SBGrid #Software #StructuralBiology

Join us April 8th for a software webinar with Alister Burt from Genentech sharing the latest on Warp.

Warp
Alister Burt, Ph.D., Computational Scientist, Genentech
Tuesday, April 8, 2025 - 12:00pm ET

Register here: https://buff.ly/QGUnCOK

#SBGrid #Webinars #StructuralBiology

Job - Alert 🎓

🎓 Biozentrum PhD Fellowships – Summer Call 2025
Deadline: 2025-05-18

Location: Switzerland, Basel

https://www.academiceurope.com/job/?id=7321

#hiring #PhD #Fellowships #LifeSciences #Research #biochemistry #biophysics #structuralbiology #microbiology

What determines the folding and stability of protein structures? In his fourth lecture, Dr. Ali Hassanali from the Abdus Salam International Centre for Theoretical Physics (ICTP) explores the intricate world of protein secondary structures, focusing specifically on alpha helices and beta sheets. Dr. Hassanali explains how these structures are stabilized through a variety of interactions, including hydrogen bonding and electrostatic effects, and the critical role of dihedral angles as illustrated by the Ramachandran plot.

This lecture also highlights the essential contributions of cysteine in forming disulfide bonds, which enhance protein stability in challenging environments. By examining the interplay of molecular interactions, Dr. Hassanali provides insights into the architectural and functional significance of these secondary structures as well as their evolutionary adaptations.

🎥 Join us for this #OpenAccess lecture and engage in discussions with Dr. Hassanali himself and other members of the Enabla community: https://enabla.com/pub/606/about

#Biophysics #Proteins #MolecularBiology #StructuralBiology #OpenScience

New Presidential executive order on proteins:

All amino acids now to be right w̶i̶n̶g̶ handed.

Leftist amino acids to be outlawed.

(Also, Z-DNA is deemed to be Communist, and is prohibited.)

Trans- and cis- peptide bonds to be banned.

Non-binary amino acid Glycine to be banned.

Proline is not a real amino acid and will be banned immediately.

Phenylalanine looks and sounds a bit like Fentanyl, banned immediately.

@strucbio #StructuralBiology #PDB

New Title Alert: polychrom- a tool designed to build mechanistic models - i.e. models that simulates a biological process.

Learn more here: https://github.com/open2c/polychrom

#SBGrid #Software #StructuralBiology