Would anyone have advice on FOSS tooling for reproducible biomedical literature searches? What I'd want to do specifically is to document the *absence* of case reports of exceptional responses to drugs that got FDA accelerated approval. (As for why, see https://osf.io/59sya/files/q6trp.) These would start with automated searches of EuropePMC, then annotation of manual review results. Since a new case report could be published at any time, I would need these to be update-able. I'm guessing an approach built on #orgmode #make and other #root technologies could work well. @lukascbossert @jameshowell
#reproducibleresearch
OSF

Astro update 2026/04

Fixes: guix/guix#7932 # Table of Contents 1. [The main highlights](#orge5dcabf) 2. [Planned](#orgf9058d6) 3. [The log](#org678e557) 1. [added <code>[16/16]</code>](#org3ae2030) 2. [fixed or imroved <code>[2/2]</code>](#org890bc96) 3. [updated <code>[43/43]</code>](#orge6a5489) ...

Codeberg.org

Join us for a 2-part workshop on Mastering Reproducible Enrichment Analysis! 📊

Presented by Anusuiya Bora and myself, with a focus on reproducibility and best practices.

📅 When: 12 and 13 May 2026
🕑 Time: 2:00 PM – 4:00 PM (AEST)
📍 Where: Online
💰 Cost: FREE for academic sector (places are limited!)

🔗Registration form link: https://lnkd.in/gQcHggGF

#Bioinformatics #RNAseq #scRNAseq #Genomics #ReproducibleResearch #OpenScience #RStats

Save the date for the next NLRN Symposium!
We will meet on 25 January 2027 in Utrecht.

Thanks to OSNL for awarding an OS meeting grant! We are looking forward to seeing many of you to discuss the implementation of #research policies and how those affect the daily work of researchers and supporters.

We have a newsletter if you prefer receiving news in your inbox: https://reproducibilitynetwork.nl/newsletter/

#ReproducibleResearch #OpenScience

Hackathon kicking off! ✨
(Pre-event for #OSR26UK)

@priyasilverstein and Ruth Davies facilitating the day of updating the #UKRN resource "Open Research Across Disciplines" - "How the principles of open research can be applied to your discipline":

ukrn.org/disciplines/

Intro slides: https://docs.google.com/presentation/d/1WASJvGs0nUsNOaRo64fERyKw0tvfrLMmL7sdAQ4eT6A/mobilepresent#slide=id.p

#OpenResearch #ReproducibleResearch

Why publish your research data in a proper repository like Zenodo, not a on a fancy institutional website?

I was looking to access the UN Peace Missions Mandate dataset for some analysis. When I checked https://www.peacemissions.info it was gone. Timed out.

I have no idea if it's temporarily down or down forever or what has happened.

It's not accessible elsewhere as far as I can tell, so the analysis is not happening.

#Data #Zenodo #ReproducibleResearch

First Keynote Announcement for uRos2026
We are excited to reveal our first keynote speaker for the Use of R in Official Statistics Conference 2026 (uRos2026):
🎤 Rebecca Killick
Professor & Director of Research, Lancaster University
Rebecca Killick is a leading expert in statistical methodology, with a strong focus on nonstationary time series analysis and applications across domains such as energy, finance, health, and official statistics.
Her work bridges real-world problems and innovative methodology, always with a strong commitment to open-source software and reproducible research.
Keynote Talk: “R and Open-Source: A love story”
In this keynote, Rebecca will reflect on over 20 years of working with R and open-source.

📅 Stay tuned for more speakers and details!
#uRos2026 #OfficialStatistics #RStats #OpenSource #DataScience #Statistics #rOpenSci #ReproducibleResearch

Next at #WorkshopsForUkraine: "Accelerate your research: reproducible and efficient analysis in #Python" by Arthur Turrell (Innovation Fellow at No10 Downing Street and the Bank of England) - now rescheduled to Thursday, May 7th, 18:00 CET. Register or sponsor a place for a student by donating to support #Ukraine. You can also donate to get recordings and all of the materials of the previous workshops. Details: https://sites.google.com/view/dariia-mykhailyshyna/main/r-workshops-for-ukraine#h.opisa5f3c5fc #ReproducibleResearch

If you’re into #Rstats and/or #bioinformatics, if you care about #ReproducibleResearch, consider helping out fellow #Guix hackers!
https://codeberg.org/guix-science/guix-cran-scripts/

The scripts above are what powers the automated imports of CRAN and Bioconductor as Guix channels, and they need ❤

guix-cran-scripts

Scripts to automate the CRAN to Guix import.

Codeberg.org
Astro Update 2026/03

# Table of Contents 1. [The main highlights](#org3bb32fb) 2. [Planned](#orgc5390a3) 3. [The log](#org85d8f3c) 1. [added <code>[4/4]</code>](#orgcc3bbc0) 2. [fixed or imroved <code>[3/3]</code>](#orgf450ebf) 3. [updated <code>[30/30]</code>](#org03631ee) 4. [removals <code>...

Codeberg.org