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"Structuring PubMed Content into Knowledge Graphs for Enhanced Biomedical Intelligence"

This dissertation introduces the Genomic Literature Knowledge Base (GLKB), a large-scale biomedical knowledge graph curated from over 33 million PubMed articles. GLKB supports retrieval-augmented generation (RAG) methods that improve factuality and reduce hallucination.

https://deepblue.lib.umich.edu/handle/2027.42/199147

GLKB can be accessed at:

https://glkb.dcmb.med.umich.edu/

#research #medicine #genomics #Pubmed #AItools #RAG

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STOP DISINFORMATION Desinformación 5d ago

abstracts from 2010 to 2024 indexed by #PubMed & show how the appearance of #LLMs led to an abrupt increase in the frequency of certain style words. This excess word analysis suggests that at least 13.5% of 2024 abstracts were processed with LLMs

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STOPDISINFORMATION 5d ago

Lower bounds differed between subcorpora
Given these potential explanations for the heterogeneity in the lower bound of #LLM use for #scientificediting, our results indicate widespread usage in most #PubMed-indexed fields, countries, journals, including the most prestigious ones. We argue that the true LLM usage in biomedical publishing may be closer to the highest lower bounds we observed, as those may be corpora where LLM usage is the most naïve & the easiest to detect.

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STOPDISINFORMATION 5d ago

biomedical abstracts from 2010 to 2024 indexed by #PubMed & show how the appearance of #LLMs led to an abrupt increase in the frequency of certain style words. This excess word analysis suggests that at least 13.5% of 2024 abstracts were processed with LLMs. This lower bound differed across disciplines, countries, journals, reaching 40% for some #subcorpora. We show that LLMs have had an unprecedented impact on scientific writing in biomedical research, surpassing the effect of major world

hicksy2 Aug 28

https://www.zbmed.de/en/about/press/latest-news/article/invitation-update-olspub-alternative-to-pubmed

I am sure there are other projects attempting the same. However, it's very unlikely Pubmed is going to exist in four years' time. It looks very difficult to do science in the USA at the moment; you're not allowed to present data if Trump doesn't like it. Unfortunately that's not how science, engineering, nature or anything actually work. So a non-USA Pubmed is going to become essential pretty quickly. Anyone know any other projects, please link. #pubmed

Invitation: Update on the OLSPub project, the alternative to PubMed

Information event in English on 25 September 2025 at 6 p.m. (CEST)

ZB MED - Informationszentrum Lebenswissenschaften

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Azul Aug 25

Este es el bot para tener los artículos que se publiquen en Mastodon

"living systematic review" OR "living systematic reviews"

https://pubmed.ncbi.nlm.nih.gov/?term=%22living+systematic+review%22+OR+%22living+systematic+reviews%22&sort=date

#Bot #RSS #PubMed #Query

#SistematicReviews #SystematicReview
#LivingSystematicReview

@birb

"living systematic review" OR "living systematic reviews" - Search Results - PubMed

PubMed

Colin Sidre Aug 25

#DernierRepouet Dans le lot, la NLM a perdu 11% de son effectif.

A noter : la ZBMed organise le 25 septembre prochain un nouveau webinaire sur son projet d'alternative à PubMed OLSPub : https://www.zbmed.de/en/about/press/latest-news/article/invitation-update-olspub-alternative-to-pubmed

A l'ordre du jour (je reprends la newsletter de la ZBMed) : "We are currently working on a website that will transparently show the changes made by #PubMed so that any doubts about content can be checked directly. Since this day, PubMed is only carrying out the normal revisions that are customary for a database (corrections and additions to data records)"

Invitation: Update on the OLSPub project, the alternative to PubMed

Information event in English on 25 September 2025 at 6 p.m. (CEST)

ZB MED - Informationszentrum Lebenswissenschaften

Botticelli Aug 24

🤖: Rxiv mechanobio
@Rxiv_mechanobio
Joined: Nov 05, 2024
Bio: I toot papers from #PubMed and preprints from #bioRxiv & #arXiv that seem to pertain to mechanobiology.My filter can be tested there on PubMed: https://link.infini.fr/mechanobiology_2022_11_07Improvement suggestions in this filter welcome, both to add or remove spurious results: contact @jocelyn_etienne

#bot #BotsOfMastodon