Sishuo WangJan 7
very glad to host the visit of
minh bui to my dept at #cuhk, fantastic talk on recent #iqtree development and its appl. on viral #phylo ; also a great experience to interact with people from #hku haogao_gu
Sishuo WangJan 7
what is +ASC (ascertainment bias correction) and how to do it manually under JC69 #phylo https://sishuowang2022.wordpress.com/2026/01/03/how-to-do-asc-ascertainment-bias-correction-manually-under-jc69/
how to do +ASC (Ascertainment bias correction) manually under JC69

This blog article will show you how to calculate the phylogenetic logL under a subs. model given +ASC in a (semi-)manual way. So, what is +ASC? As shown at it refers to An ascertainment bias correc…

Sishuo Wang
Sishuo WangJun 23, 2025
How does PAML read a rooted tree? https://sishuowang2022.wordpress.com/2025/04/25/how-does-paml-read-a-rooted-tree/ #phylo #PAML
How does PAML read a rooted tree?

IQ-Tree is the software i use most often to build phylogenetic trees. Sometimes I also need to deal with the output of PAML. However, PAML-MCMCtree could read rooted tree in a different order from …

Sishuo Wang
Sishuo WangMar 12, 2025
A brief summary of our recent work on dating the bacterial tree of life Using Ancient Symbiosis https://sishuowang2022.wordpress.com/2025/03/01/a-brief-summary-of-our-recent-work-on-dating-the-bacterial-tree-of-life/ #syst_biol #phylo
A brief summary of our recent work on dating the bacterial tree of life Using Ancient Symbiosis

Obtaining a timescale for bacterial evolution is crucial to understand early life evolution but is difficult owing to the scarcity of bacterial fossils. Also, the mixture substitution models like C…

Sishuo Wang
juli g pausasFeb 5, 2025

Let's see the magic of @Mastodon

Is there a way to plot a dated phylogeny with a log-scale time axis? If possible, using R

#phylogenetics #phylo #rstats @rstats @ecology @plants @botany @plantscience @nature @biodiversity @evolution

Sishuo WangJan 23, 2025
HOW TO SPECIFY Cxx (C10-C60) WITHOUT +G (GAMMA RATE) IN IQ-TREE https://sishuowang2022.wordpress.com/2025/01/23/how-to-specify-cxx-c10-c60-without-g-gamma-rate-in-iq-tree/ #phylo
HOW TO SPECIFY Cxx (C10-C60) WITHOUT +G (GAMMA RATE) IN IQ-TREE

I recently noted that IQ-Tree’s Cxx (C10-C60) profile mixture substitution models automatically includes +G, the discrete gamma adjustment on relative rates. To see this, run the following an…

Sishuo Wang
Poirux0nLineJan 17, 2025
Question with but true question even....
Internet 4.0 will define how in 50 to 100 years:
That of intelligent boots thanks to the pseudo AI, that of the proven entry of the outrageous use of the false, of the virtual in arguments during the real discussion....
The question is open, you have the rest of your life to answer it... 😉
#phylo #internet #web #whatabout #web3 #web4 #webz ## ### ####apartirdeombienfautconsulter
#opensource #privacy #gnu #voice #freespeech
Poirux0nLineJan 17, 2025
Question con mais vraie question qd même....
L internet 4.0 on le définira comment dans 50 100 ans , :
Celui des boots intelligent grâce à la pseudo AI, celui l entrée avérée de l usage outrancier du faux, du virtuel dans des arguments lors du réelle discussion....
La question est ouverte ,vous avez le reste de votre vie pour y répondre... 😉
#phylo #internet #web #whatabout #web3 #web4 #webz ## ### ####apartirdeombienfautconsulter
#opensource #privacy #gnu #voice #parolecitoyenne
Poirux0nLineJun 18, 2018
Ce matin, mon bac phylo a moi c'est plutôt :
On reste ubu ou on Deb ?
Bizarrement les gds penseurs antiques n' ont jamais donné leur avis sur cette question... 🤔🤔🤔
#bac2018 #phylo #ubuntu #debian