Egon WillighagenJul 31, 2024

new blog post about a not so new anymore paper: https://chem-bla-ics.linkedchemistry.info/2024/07/31/directed-metabolic-network.html

"This paper explains how various #openscience resources (@wikidata, @reactome, @wikipathways) are used to visualize the biological story of the data from two #metabolomics experiments archived in #MetaboLights. Using #Neo4J and #Cytoscape she visualizes the data onto a network created with RDF, #SPARQL from the above resources"

New paper: “Discovering life’s directed metabolic (sub)paths to interpret human biochemical markers using the DSMN tool”

I am still catching up with a lot of work, and found out I actually had forgotten to blog about this cool article by Denise Slenter: “Discovering life’s directed metabolic (sub)paths to interpret human biochemical markers using the DSMN tool” (doi:10.1039/D3DD00069A). This paper explains how various open science resources (Wikidata, Reactome, WikiPathways) are used to visualize the biological story of the data from two metabolomics experiments archived in MetaboLights.

chem-bla-ics
Show threadsneumannJun 25, 2024
@schymane thanks for the pictures! In case someone wonders about that faded T-Shirt, that was retrieved from low in the stack and features my first dataset #MTBLS2 in #MetaboLights.
TheLipidHoffDec 15, 2022
Day 4 of our de.NBI #biohackathon in Wittenberg. Great progress on #mztabm support in #lipidxplorer and #mzmine3, working towards more streamlined submissions to #emblebi #metabolights