๐Ÿง New paper by Carneiro-Nascimento et al: awake #invivo #2p #CalciumImaging reveals diverse #CalciumDynamics in #meningeal #macrophages during cortical spreading depolarization (CSD), an aberrant #brain #hyperexcitability event linked to #migraine, #stroke, and #traumatic brain injury. #Neuroscience

Intravital calcium imaging of ...
Intravital calcium imaging of meningeal macrophages reveals niche-specific dynamics and aberrant responses to brain hyperexcitability

Intravital microscopy of meningeal macrophage Caยฒโบ dynamics reveals previously unknown population heterogeneity, vasomotion-coupled activity, and diverse responses during steady state and neuroinflammatory conditions, offering relevant insights into brain immune regulation.

eLife

๐Ÿง  New paper by Carneiro-Nascimento et al: awake #invivo #2p #CalciumImaging reveals diverse #CalciumDynamics in #meningeal #macrophages during cortical spreading depolarization (CSD), an aberrant #brain #hyperexcitability event linked to #migraine, #stroke, and #traumatic brain injury.

๐Ÿ“ https://doi.org/10.7554/eLife.109888

#Neuroimmunology #Neuroscience #imaging @eLife https://fediscience.org/@eLife/116605475951455191

๐Ÿง  New paper by Phillips et al: #Neuroplex combines #miniscope #CalciumImaging with multiplexed #SpectralImaging through the same #GRINlens, allowing up to 9 projection-defined #NeuronalPopulations to be identified in freely #behaving mice. Instead of measuring activity alone, the approach links #FunctionalDynamics directly to circuit identity within the same animal and behavioral session.

๐Ÿ“ https://doi.org/10.7554/eLife.110277

#Neuroscience #CompNeuro #NeuralCircuits #Imaging @eLife https://fediscience.org/@eLife/116589668668928682

Recent findings show that hippocampal neurons shift their activity backward in time as learning occurs, enabling anticipation of rewards before they happen. Using calcium imaging in mice performing a delayed nonmatching-to-location task, the study tracked the same neurons over weeks and observed a backpropagation of tuning from reward delivery to earlier moments, including the moment of correct touchscreen choice. The results portray the hippocampus as a dynamic predictive map that reorganizes with experience to guide future behavior.

This work is of interest to psychology because it provides concrete neural evidence for predictive coding and memory-based anticipation, illustrating how learning reshapes mental representations to forecast future events. It links memory, prediction, and action in a measurable neural framework.

Article Title: Hippocampal neurons shift their activity backward in time to anticipate rewards

Link to PsyPost Article: ift dot tt/fVBpnxF

Copy and paste broken link above into your browser and replace "dot" with "." for link to work. We have to do it this way to avoid displaying copyrighted images.

#Hippocampus #PredictiveCoding #NeuralPlasticity #CalciumImaging #RewardLearning

๐Ÿง  New preprint by Kim et al. (2025) from David Andersonโ€™s lab: A line #attractor maintains aggressiveness during feeding in โ€œhangryโ€ mice ๐Ÿ”๐Ÿ. Using in vivo #CalciumImaging and #rSLDS modeling, they show how moderate fasting stabilizes an aggression-related attractor in #VMHvl, while prolonged fasting collapses it, linking hunger, motivation, and aggression through #PopulationDynamics:

๐ŸŒ https://doi.org/10.1101/2025.10.16.682711

#Neuroscience #CompNeuro #Behavior #AttractorDynamics #Hypothalamus #2p #imaging

If you want to study #HippocampalReplay... Use ephys, not #CalciumImaging!!

(Calcium imaging doesn't detect single spikes well, but replay mostly involves single spikes)
#Neuroscience #SpatialCognition #Hippocampus

New #TeachingMaterial available: Functional Imaging Data Analysis โ€“ From Calcium Imaging to Network Dynamics. This course covers the entire workflow from raw #imaging data to functional insights, including #SpikeInference & #PopulationAnalysis. Designed for students and for self-guided learning, with a focus on open content and reproducibility. Feel free to use and share it ๐Ÿค—

๐ŸŒ https://www.fabriziomusacchio.com/blog/2025-07-13-function_image_analysis/

#Python #DataScience #MachineLearning #Neuroscience #OpenSource #calciumimaging #CompNeuro

๐Ÿ“ข Our new study is now published in Communications Biology (Nature Portfolio):
We demonstrate deep in vivo #ThreePhoton imaging ๐Ÿ”ฌ of neurons ๐Ÿง  and glia in the medial prefrontal cortex with subcellular resolution!

๐Ÿ‘‰ https://www.nature.com/articles/s42003-025-08079-8

#Neuroscience #Microscopy #CalciumImaging #Microglia #DZNE @dzne

๐Ÿ“ขHot off the press: "Neuronal correlates of sleep in honey bees"

#CalciumImaging๐Ÿ”ฌ in sleeping #bees๐Ÿ: Antennal lobe neurons synchronise stronger during #sleep, likely due to reduced GABAergic coupling. #SNN๐Ÿ’ป simulations show reduced #odour processing, similar to human sleep๐Ÿ˜ด.

๐Ÿ“ฐin Neural Networks: https://doi.org/10.1016/j.neunet.2025.107575

๐ŸพThanks to all collaborators: Sebastian Moguilner, Ettore Tiraboschi, Giacomo Fantoni, Heather Strelevitz, Hamid Soleimani, Luca Del Torre, @urihasson

๐Ÿ“#CIMeC #UniTrento

Quite the big deal:

"Light-field deep learning enables high-throughput, scattering-mitigated calcium imaging", by Howe et al. 2025 (Amanda Foust lab).
https://www.biorxiv.org/content/10.1101/2025.03.17.643718v1.full

Transfers one-photon light field images of Ca2+ sensors monitoring neuronal activity, which suffer from scattering in the mouse brain, to two-photon volumes that don't, using machine learning.

Image volumes acquired at 100 Hz demonstrate 10Hz spike rates.

#neuroscience #mouse #CalciumImaging

Light-field deep learning enables high-throughput, scattering-mitigated calcium imaging

Light field microscopy enables volumetric, high throughput functional imaging. However, the computational burden and vulnerability to scattering limit light field's application to neuroscience. We present a strategy for volumetric, scattering-mitigated neural circuit activity monitoring. A physics-based deep neural network, LNet, is trained with two-photon volumes and one-photon light fields. A processing pipeline uses LNet to extract calcium activity from light-field videos of jGCaMP8f-expressing neurons in acute cortical slices. The extracted time series have high signal-to-noise ratios and reduced optical crosstalk compared to conventional volume reconstruction. Imaging 100 volumes per second, we observed putative spikes fired at up to 10 Hz and the spatial intermingling of putative ensembles throughout 530 x 530 x 100-micron volumes. Compared to iterative algorithms, LNet LFM cuts light-field video processing time from hours to minutes and hence advances the goal of real-time, scattering-robust volumetric neural circuit imaging for closed-loop and adaptive experimental paradigms. ### Competing Interest Statement The authors have declared no competing interest.

bioRxiv