🖼️🎥 New to BIIGLE? Join the BIIGLE4Beginners Workshop!
🗓️ Dec 11, 2025 | 14:00–16:00 CET | 🌐 Online
Learn end-to-end image & video annotation from #BioImaging – perfect for newcomers!
Register: https://www.denbi.de/training-courses-2025/1984-biigle4beginners-december-workshop-2025
#BIIGLE #ImageAnnotation #VideoAnnotation

🧬 How can AI bridge the gap between histology and spatial transcriptomics?

🔗 SegDecon bridges histology and transcriptomics through AI-based nuclei segmentation and image-informed spatial deconvolution. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2025.10.041

📚 CSBJ: https://www.csbj.org/

#SpatialTranscriptomics #Histology #Genomics #SystemsBiology #NucleiSegmentation #AI #CellBiology #TissueBiology #Bioimaging

Quantifying Electrophoresis Gel Bands with QuPath and Galaxy

Gel Electrophoresis is a staple of molecular biology, providing a way to separate DNA, RNA, or proteins by size and charge. While gels are usually interpreted visually, the ability to quantify band intensities offers much richer insights—allowing researchers to estimate product yields, verify PCR amplification, or assess protein purity.

Galaxy Training Network
Quantifying Electrophoresis Gel Bands with QuPath and Galaxy

Gel Electrophoresis is a staple of molecular biology, providing a way to separate DNA, RNA, or proteins by size and charge. While gels are usually interpreted visually, the ability to quantify band intensities offers much richer insights—allowing researchers to estimate product yields, verify PCR amplification, or assess protein purity.

Galaxy Training Network

On Day 2 of European Galaxy Days, Beatriz Serrano-Solano presented Update by the Imaging Community.
Read more: https://galaxyproject.org/community/sig/image-analysis/

@galaxyfreiburg
#imaging_community #bioimaging #EGD2025 #galaxyproject #eosc #fair #community #open_science

Amazing talk by Björn Grüning from @galaxyfreiburg at @unifreiburg and task area leader @nfdi4bioimage on the power of #Galaxy at #CoRDI2025. Cloud-deployed workflows as a basis for reuse across domains.

An example? Voronoi segmentation in #bioimaging, forest imagery & astronomy. 👏

Interested in the intersection of #bioimaging and #datascience?

The "Bio-Image Data Science Lectures 2025 @unileipzig / ScaDS.AI Dresden/Leipzig developed by @haesleinhuepf, provide theoretical foundations and practical skills — including #Python programming, #machinelearning, #deeplearning, #LLMs, research data, and software management. Structured over several months, the material is perfect for students, researchers, and #selfstudy.

📝 https://zenodo.org/records/15858127

From Josh Moore, German Bioimaging research software engineer and OME and Zarr developer and maintainer:

🚀 We’re hiring again! Join German BioImaging as a Software Developer!

💻 Build scalable #bioimaging solutions

🌍 Collaborate globally

🎯 Contribute to open science through #OME #Zarr

📣 Tell your #NGFF friends.

Remote, full-time. Apply by 30 June 2025. All submissions via:
https://gerbi-gmb.de/machform/view.php?id=86038

Welcome to the GerBI-GMB Job Application Form