Mastodawn

Albert Cardona Feb 25

Bioimage Analysis course at Pasteur in Paris, by Jean-Yves Tinevez and Jean-christophe Olivo-Marin.

Dates: June 1st-5th, 2026.

Deadline for application: March 1st, 2026.

With two tracks:

* ‘early career investigators track’: aims at mastering the most recent and common image analysis software tools.

* ‘analysts track’: focuses on the use of advanced algorithms and computing resources for bioimage analysis.

https://www.pasteur.fr/en/education/programs-and-courses/pasteur-courses?id_cours=32719

#ImageProcessing #BioimageInformatics #Fiji #Icy #QuPath #Napari #Ilastik #TrackMate

Pasteur courses

Institut Pasteur

Galaxy-Team der Uni Freiburg Oct 14, 2025

New tutorial from the Galaxy Training Network! Learn how to quantify gel electrophoresis bands using QuPath + Galaxy. Fully open, reproducible, and beginner-friendly.
https://training.galaxyproject.org/training-material/news/2025/08/18/bands_image_analysis.html

@galaxyproject
#Bioinformatics #ImageAnalysis #GelElectrophoresis #OpenScience #ReproducibleResearch #GalaxyProject #QuPath #Bioimaging #LifeSciences #OpenSourceTools #ScienceEducation #DataAnalysis #ResearchTools

Quantifying Electrophoresis Gel Bands with QuPath and Galaxy

Gel Electrophoresis is a staple of molecular biology, providing a way to separate DNA, RNA, or proteins by size and charge. While gels are usually interpreted visually, the ability to quantify band intensities offers much richer insights—allowing researchers to estimate product yields, verify PCR amplification, or assess protein purity.

Galaxy Training Network

galaxyproject Oct 14, 2025

New tutorial from the Galaxy Training Network! Learn how to quantify gel electrophoresis bands using QuPath + Galaxy. Fully open, reproducible, and beginner-friendly.
https://training.galaxyproject.org/training-material/news/2025/08/18/bands_image_analysis.html

@galaxyfreiburg
#Bioinformatics #ImageAnalysis #GelElectrophoresis #OpenScience #ReproducibleResearch #GalaxyProject #QuPath #Bioimaging #LifeSciences #OpenSourceTools #ScienceEducation #DataAnalysis #ResearchTools

Quantifying Electrophoresis Gel Bands with QuPath and Galaxy

Gel Electrophoresis is a staple of molecular biology, providing a way to separate DNA, RNA, or proteins by size and charge. While gels are usually interpreted visually, the ability to quantify band intensities offers much richer insights—allowing researchers to estimate product yields, verify PCR amplification, or assess protein purity.

Galaxy Training Network

Dave Mackey Sep 1, 2023

it's interesting working on projects in #MedicalImaging, there are far fewer resources than I anticipated. For example, web-based viewers for #pathology images? #OpenSeaDragon or #GeoJS. At least that is what I'm seeing...

Books on web #development for pathology images? None.

There are a few cool projects that aren't web-based, for example #QuPath, but still!

(I suspect this may be due in part to the #grant #funding nature of many projects in this space)

#HealthTech

Serdar Balci Aug 26, 2023

Tying to use #QuPath #extension #wsinfer in my routine cases https://github.com/qupath/qupath-extension-wsinfer

https://serdarbalci.wordpress.com/2023/08/26/tying-to-use-qupath-extension-wsinfer-in-my-routine-cases-https-github-com-qupath-qupath-extension-wsinfer-digitalpathology-pathology-pathologists/

GitHub - qupath/qupath-extension-wsinfer: QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/

QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/ - GitHub - qupath/qupath-extension-wsinfer: QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/

GitHub

Albert Cardona Nov 25, 2022

Have you discovered the image processing forum yet? https://forum.image.sc

Featuring tutorials, requests for guidance, help, discussion of new features and documentation for open source software #FijiSc #ImageJ #CellProfiler #DeepLabCut #Icy #ilastik #napari #QuPath #scikitimage #StarDist and many more.

#java #python #kotlin #groovy