Marc Robinson-RechaviJan 20
The next step in a great scientific adventure led by Marina Brasó Vives on amphioxus evolution: population genomics of a species with 3% heterozygosity! Read the thread and the preprint 😁 #amphioxus #EvoDevo #PopulationGenomics #MolecularEvolution
https://bsky.app/profile/mbrasovives.bsky.social/post/3mctuhgks7k2q
Marina Brasó-Vives (@mbrasovives.bsky.social)

1/7 🧬 New preprint! What is it like to have one of the highest genomic diversities among metazoans? 🔗 https://www.biorxiv.org/content/10.64898/2026.01.13.699254v1.full.pdf+html

Bluesky Social
Physalia-coursesOct 22
If you want to learn how to analyse #RADseq data using #Stacks you can still join us for this course starting next week: https://www.physalia-courses.org/courses-workshops/course16/
#Evolution #Genomics #Bioinformatics #PopulationGenomics
RAD-seq data analysis

ONLINE, 27-31 October 2025 To foster international participation, this course will be held online

physalia-courses
SMTAug 25, 2025
#GWAS #PopulationGenomics #BIAS #PRS academic.oup.com/gigascience/...

EraSOR: a software tool to eli...
EraSOR: a software tool to eliminate inflation caused by sample overlap in polygenic score analyses

AbstractBackground. Polygenic risk score (PRS) analyses are now routinely applied across biomedical research. However, as PRS studies grow in size, there i

OUP Academic
SMTAug 25, 2025
#GWAS #PopulationGenomics #BIAS #PRS https://academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad043/7199403
EraSOR: a software tool to eliminate inflation caused by sample overlap in polygenic score analyses

AbstractBackground. Polygenic risk score (PRS) analyses are now routinely applied across biomedical research. However, as PRS studies grow in size, there i

OUP Academic
Marc Robinson-RechaviJun 4, 2025
You can still apply: Postdoc job opportunity! We're looking for early career researcher in evolutionary genomics to study the relation between intra-specific gene expression variability, polymorphism, and macro-evolutionary rates. We have all of the data in 3 fishes and amphioxus, just waiting for your expertise and enthusiasm!
https://tinyurl.com/3aewk286
#EvoDevo #MolecularEvolution #bioinformatics #PopulationGenomics #RNAseq #PostDoc
Marc Robinson-RechaviMay 13, 2025
Postdoc job opportunity! We're looking for early career researcher in evolutionary genomics to study the relation between intra-specific gene expression variability, polymorphism, and macro-evolutionary rates. We have all of the data in 3 fishes and amphioxus, just waiting for your expertise and enthusiasm!
https://tinyurl.com/3aewk286
#EvoDevo #MolecularEvolution #bioinformatics #PopulationGenomics #RNAseq #PostDoc
Marc Robinson-RechaviFeb 7, 2025

Excited to read this, I've been worried about the recurrence of these peaks in #PSMC graphs for years. Also, just on time before we submit one (a first for me). #PopulationGenetics #PopulationGenomics #MethodsMatter
https://bsky.app/profile/leonhilgers.bsky.social/post/3lhl5ti3nec25

(If Mastodon doesn't show the Bluesky post: "Avoidable false PSMC population size peaks occur across numerous studies" https://doi.org/10.1016/j.cub.2024.09.028)

Leon Hilgers (@leonhilgers.bsky.social)

‼️These #PSMC #peaks are #artifacts‼️ Seen #PSMC results like this🤔? They are caused by ill-set parameters, #very #common, and #easy #to #solve! For details see 🧵& OA paper @currentbiology.bsky.social 🙂🐢🧬🎉! https://cell.com/current-biology/fulltext/S0960-9822(24)01239-9

Bluesky Social
Guillaume LouvelJan 31, 2025

Really had to read this article for my current project:

Raynaud et al. 2023 “Performance and limitations of linkage-disequilibrium-based methods for inferring the genomic landscape of recombination and detecting hotspots: a simulation study”

https://peercommunityjournal.org/articles/10.24072/pcjournal.254/

#SciArticleScreening #PopulationGenetics #PopulationGenomics #PCI

Performance and limitations of linkage-disequilibrium-based methods for inferring the genomic landscape of recombination and detecting hotspots: a simulation study

Jennifer LeonardJan 18, 2025

Interesting opportunity!
A permanent position as an Associate Professor in #Zoology is available
at the #NaturalHistoryMuseum #University of Oslo. #MuseumJobs #EvolutionaryBiology, #comparativegenomics #Transcriptomics #Systematics #populationgenomics

https://www.jobbnorge.no/en/available-jobs/job/268410/associate-professor-in-zoology

deadline February 23rd 2025

Associate Professor in Zoology (268410) | University of Oslo

Job title: Associate Professor in Zoology (268410), Employer: University of Oslo, Deadline: Sunday, February 23, 2025

Jobbnorge.no
Show threadGuillaume LouvelOct 30, 2024

So I wrote a quick step-by-step procedure to apply False-Discovery rate correction on HWE tests, starting from a VCF:

https://www.normalesup.org/~glouvel/blog/false-discovery-rate-correction-for-hardy-weinberg-tests-on-a-vcf/

#PopulationGenomics #Bioinformatics

Guillaume Louvel - False-Discovery rate correction for Hardy-Weinberg tests on a <span class="caps">VCF</span>

It is common to apply a “quality check” filter on a VCF file to retain only variants that do not depart from a neutrality expectation, namely the...