Nuestro pequeño cluster para cálculos de dinámica molecular en el CURE. Configurar este cluster fue una gran experiencia que amplió notablemente mis conocimientos previos de sysadmin con Undernet. Le saco poco cartel #cluster #moleculardynamics #cure #udelar #diy #physics #debian #slurm #openmpi

My head hurts. Doing a deep-dive into containerization/VM with #Jenkins. So many options. I think I'll give #LXD a shot. But frankly, since my #OpenMPI program is already containerized via #Apptainer, I'll just go ahead and build on the (fairly powerful) Jenkins host for now, just to get the pipeline built as a proof of concept.

Time for an adult beverage.

Finishing some runtime system work; decided to try a #deskpi #super6c cluster board.

An ITX form factor beowulf cluster is amazing.

#slurm & #nfs worked out of apt.

#ucx, #openmpi, #openshmem, #openpmix, #gasnet, & #hpx needed custom compilation.

@raspberrypi #arm #hpc #supercomputing

[FLISoL24] Avogadro: Un clúster de cálculo numérico con software libre (Santiago Roland)

https://tube.undernet.uy/w/pmL4BieQjo57BWfhWPK8MX

[FLISoL24] Avogadro: Un clúster de cálculo numérico con software libre (Santiago Roland)

PeerTube

@kylewritescode Good morning Kyle.

I already had a productive morning. I finally figured out how to let my hybrid #Apptainer #OpenMPI container for our NASA code talk to #UKY's #HPC cluster’s InfiniBand backend. Now the code scales beautifully. Next up, getting it to run on our collaborators’ cluster at #UMN.

I think I’ll have my coffee now.

Hoy reinstalamos el cluster de dinamica molecular del CURE con Debian 12, 5 PCs con OpenMPI y un RAID-5 para almacenar los cálculos... el dios debianita debe estar orgulloso de mi y contento por la faena #cluster #cure #openmpi #slurm #debian #moleculardynamics #fisica #physics #dinamicamolecular
NVD - CVE-2023-41915

OpenMPI 5.0 Ready To Say "Goodbye" To 32-Bit Support

@Santral pretty much the defacto standard in #HPC is #MPI or #OpenMPI on this topic many books are available https://mpitutorial.com/recommended-books
Recommended Books · MPI Tutorial