VTKUnity Medical Volume Vie... #Vtk #Unity #Medicalimageviewer #Medicalimaging #Dicom #Nifti #Nrrd #Metaimage #Vtkxmlimage #Volumerendering #Volumecropping #Slicerendering #Interactivereslicing #Multiplanarreconstruction #Windowlevel #AssetStore

https://u3dn.com/packages/vtkunity-medical-volume-viewer-275516

I posted a new introduction to surface #gifti and volume #NIfTI #fMRI data at https://mvpa.blogspot.com/2025/01/intro-to-working-with-volume-and.html.

The material is mostly general, with all examples using #baseR #rstats code; it's accompanied by a major update to my gifti #knitr tutorial.

I hope these will be useful to folks getting started with #neuroimaging datasets, as well as anyone looking for example scripts for reading, plotting, and manipulating (human fMRI) brain data files.

The call for contributions to the Orthanc Conference 2023 is now open! Topics of interest include:

Orthanc-specific contributions:
- Real-world deployments of Orthanc (clinical departments, hospitals, regional/country-wide implementations,...).
- Scientific projects that leverage Orthanc.
- Industrial applications built using Orthanc.
- Extensions to Orthanc (scripts, plugins,...).

Contributions beyond Orthanc:
- Free, libre and open-source software (FLOSS), as well as open hardware projects, for medical imaging and digital pathology.
- FLOSS for the automated analysis of medical images (computer vision, deep learning, and machine learning).
- Healthcare interoperability through FLOSS and open standards (#DICOM, #BIDS, #NIfTI, #IIIF, #FHIR,...).

Deadline: Early September.

Full information is available at: https://www.orthanc-server.com/static.php?page=orthanc-con-2023

Major thanks to @tannguyen for spotting and reporting a bug in my niftiPlottingFunctions.R plot.volume() function!

The code at https://osf.io/k8u2c is updated; see https://mvpa.blogspot.com/2023/03/bugfix-for-niftiplottingfunctionsr.html for info and examples.

(This #baseR #rstats function is for plotting #fMRI #nifti images in #knitr documents.)

... it is painful to find out there was a bug, but so much better to fix it than to continue its propagation! I am grateful to @tannguyen and hope anyone else seeing something odd lets me know.

The SimpleITK plugin now supports Linux and MacOS! So you can import NRRD, NIfTI and JPEG compressed DICOM on these platforms too 🥳
https://github.com/mlavik1/UnityVolumeRendering/pull/117

#VolumeRendering #Unity #DICOM #NRRD #NIfTI

You can now import JPEG compressed DICOM datasets, NRRD and NIFTI using SimpleITK.

By enabling SimpleITK in the settings window, SimpleITK binaries will automatically be downloaded and SimpleITK will be used for these dataset formats.

Since SimpleITK only distributes C# wrapper binaries for Windows this does not yet work on Linux, but I'll start looking into distributing them myself.
#dicom #nrrd #nifti #volumerendering