New preprint: Axon — open-source pipeline for brain organoid MEA electrophysiology
✅ Per-unit firing rate, ISI, CV, STTC
✅ SpikeInterface spike sorting
✅ Graph theory network topology
✅ 29 subjects · 4 DANDI datasets
📄 https://doi.org/10.5281/zenodo.20492811
💻 https://github.com/Metin1558/axon
#neuroscience #openscience #organoid #MEA #DANDI #NWB
Hangrutsch auf der Strecke 1940. Hatte ich auch noch nicht...
#NWB #RB84
Generated a quick plot to see usage trends for Open Source Brain v2 (#OSBv2): an integrated #research platform for #neuroscience that indexes multiple model and data sources (#DANDI, #ModelDB, #Biomodels, #Github) and provides compute resources on the #cloud in "workspaces". It also includes specialist applications: #NWBExplorer for working with data in the NeuroData Without Borders (#NWB) format; #NetPyNE-UI for biophysically detailed #ComputationalModelling and a #JupyterLab environment.