One last call for this #job before applications close tomorrow.

A web developer role with a twist! We're looking for folks with #rust, #wasm and #webgl who would like to join the #ensembl team working on our new genome browser on the Wellcome Genome Campus (just south of Cambridge in the UK).

Our genome browser: https://beta.ensembl.org/genome-browser/grch38?focus=gene:ENSG00000101384&location=20:10619526-10692157

If you're interested there's a link to the job site below which also has information about the benefits etc.

Job advert: https://embl.wd103.myworkdayjobs.com/en-US/EMBL/details/Web-Developer_JR2779

Is anyone attending Festival of Genomics in London later this month?

There’s going to be an #ensembl workshop and a whole host of other talks by folks from EMBL-EBI too. Should be a good one!

As well as attending the talks I’m going to be on the lookout for lab timer swag - they’re great for kitchen!

πŸ˜Άβ€πŸŒ«οΈ

#FestivalOfGenomics #fog #TopTip

#Genomics
#Genetics
#Academia

Huh. #Ensembl is acting really weird.

I go to Biomart. I choose Mouse for current build. I enter a list of a few (4? 5?) genes to limit the list to. I go to results to see four defaults (gene ids and transcript ids I think).

Instead of results, the next only contains the URL of the requested pasted as text into the body of the page. Odd.

Edit: Ah something about the page rendering made the Results button temporarily disappear. All fine now.

πŸ’‘ Join our tutorial to explore the new Ensembl platform and Ensembl VEP (Variant Effect Predictor). Gain hands-on experience with the updated interface and learn to analyse and annotate various genomic data.

πŸ‘‰ Register here: https://tinyurl.com/3y8ay2d6

πŸ”Ή Workshop organized by Jorge Batista da Rocha, Louisse Mirabueno and Aleena Mushtaq (EMBL-EBI)

@P_Palagi @valentynbez
#Genomics #Ensembl #bc2basel #BioinformaticsTraining

Registration

The [BC]2 Basel Computational Biology Conference is Switzerland's main event in the domain of Computational Biology and one of the major events of its kind in Europe. The conference unites scientists from academia, industry and healthcare.

If you're interested in finding out more about the new Ensembl Genome Browser, there's a webinar today (29/01/25) @ 15:30 GMT

Click the link to register - https://www.ebi.ac.uk/training/events/introducing-new-ensembl-genome-browser/

#ensembl #genoneBrowser #genomics

Introducing the new Ensembl Genome Browser -

Introducing the new Ensembl Genome Browser -

Happy birthday Ensembl!! πŸŽ‚

25 years of serving data! πŸ₯³

#services #data #Ensembl #genomics

Can I bypass #biomart when asking for #ensembl genomic data? I use many Biomart calls to get a bunch of data but it's slow, and Biomart has been offline for a while now, so it might be time to update my approach.

There is my email in my ${HOME}: /home/[email protected]/ . When using #ensembl VEP, the '@' is not escaped in VEP/Perl/BioPerl

https://github.com/Ensembl/ensembl-vep/issues/1824

VEP (+conda ?) fails when there is a '@' in the path. Β· Issue #1824 Β· Ensembl/ensembl-vep

Describe the issue Hi all, I'm not sure the current issue is a problem with the conda recipe, with VEP itself or something else. So feel free to close this issue if this is more a bioconda problem....

GitHub
Ensembl 2025

Abstract. Ensembl (www.ensembl.org) is an open platform integrating publicly available genomics data across the tree of life with a focus on eukaryotic spe

OUP Academic
Does any of you people of Mastodon have a clue why the rat genes are missing from Ensemble Biomart? Rat genome is part of the latest release. Asked the help desk but no response yet.
#ensembl #bioinformatics