Seen on the #NeuroMethods slack:

Any suggestions for algorithms to track pupil in mice? (Not #DeepLabCut )

#AnimalBehaviour #Tracking

Good morning #ISOT2024!
Today's the last poster session of the meeting @[email protected], so come and stop by to chat.

I'll try to be around during most breaks!

If you're interested in #DeepLabCut (or #MoSeq), definitely come and chat!

I have added a hands-on #tutorial to the Assessing Animal Behavior lecture. The tutorial covers the GUI-based use of #DeepLabCut 💻, a software package for markerless pose estimation of animals 🐭🔍 It’s aimed at #neuroscience students with no or little programming knowledge. Feel free to share it with your students and colleagues ☺️

🌍 https://www.fabriziomusacchio.com/teaching/teaching_assessing_animal_behavior/05_deeplabcut

#Ethology #MachineLearning #behaviourscience #BehavioralScience #animalbehavior

Anyone here working on #PoseEstimation #animalbehavior #neuroethology ?

You may be interested in the free and open-source Python 🐍 package I’m currently working on, together with @adamltyson @bd_peri and others.

It’s called movement, and it’s made for analysing the pose tracks produced by pose estimation frameworks, like #DeepLabCut and #SLEAP.

Website: https://movement.neuroinformatics.dev
GitHub: https://github.com/neuroinformatics-unit/movement

It’s still in early development 🏗️ but we appreciate feedback/feature requests.

Check out the detailed thread on our team’s mastodon account: @neuroinformatics

Well, it's time again: I'm officially looking for a new #PostDoc

Please share far and wide!

My expertise lies in behavioral ecology, focused on mammalian chemical communication. I've also been exploring #DeepLabCut & #MoSeq for automated behavior analysis.

For more info about my research & background, visit my newly revamped website https://tsievert.com/
Shout-out to my friend Ramin at websplash GmbH for the fantastic redesign!

#PostDocJob #AcademicJobs #AcademicLive #AcademicChatter

We recently made our lab's handbook for #DeepLabCut public!
It's not finished yet and quite rough on the edges, but you can watch us (well, me) struggle in the process of trying to establish #DeepLabCut in our lab.

The handbook also includes #HowTo.s and scripts to run everything on a HPC cluster.

Long-term aim is to also include guides and scripts for #KeypointMoseq.

Check it out at https://github.com/LassanceLab/DLC_handbook

#openscience #opencode #opendata