🔬 New #SpectralUnmixing paper by Ashesh et al. ( @florianjug): A #DeepLearning-based framework #MicroSplit for #FluorescenceMicroscopy that separates highly overlapping #fluorophore signals directly from multiplexed #ImagingData. Improves signal separation, reduces crosstalk, & enables more accurate multi-channel #imaging w/o requiring extensive reference measurements. Can’t wait to try this out on our in vivo #2P/ #3P imaging data:
@nfdi4bioimage started the new year with enthusiasm and many plans, and you'll find what's new, what's upcoming, and what's to read or review in our latest newsletter.
Take a look to find out about the latest developments within the @NFDI and get an overview of upcoming conferences, workshops, and publications related to #bioimaging research data management for the upcoming year.
📨 https://nfdi4bioimage.de/community-integration/newsletter/#c896618
Job Alert
PhD Candidate (m/f/d)
Deadline: 2026-02-02
Location: Germany - Dortmund
https://www.academiceurope.com/ads/phd-candidate-m-f-d/
#hiring #PhD #CardiovascularResearch #Immunology #Bioimaging #naturalsciences #biology #biochemistry #LifeSciences
🧬 How can AI bridge the gap between histology and spatial transcriptomics?
🔗 SegDecon bridges histology and transcriptomics through AI-based nuclei segmentation and image-informed spatial deconvolution. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2025.10.041
📚 CSBJ: https://www.csbj.org/
#SpatialTranscriptomics #Histology #Genomics #SystemsBiology #NucleiSegmentation #AI #CellBiology #TissueBiology #Bioimaging
New tutorial from the Galaxy Training Network! Learn how to quantify gel electrophoresis bands using QuPath + Galaxy. Fully open, reproducible, and beginner-friendly.
https://training.galaxyproject.org/training-material/news/2025/08/18/bands_image_analysis.html
@galaxyproject
#Bioinformatics #ImageAnalysis #GelElectrophoresis #OpenScience #ReproducibleResearch #GalaxyProject #QuPath #Bioimaging #LifeSciences #OpenSourceTools #ScienceEducation #DataAnalysis #ResearchTools
Gel Electrophoresis is a staple of molecular biology, providing a way to separate DNA, RNA, or proteins by size and charge. While gels are usually interpreted visually, the ability to quantify band intensities offers much richer insights—allowing researchers to estimate product yields, verify PCR amplification, or assess protein purity.
New tutorial from the Galaxy Training Network! Learn how to quantify gel electrophoresis bands using QuPath + Galaxy. Fully open, reproducible, and beginner-friendly.
https://training.galaxyproject.org/training-material/news/2025/08/18/bands_image_analysis.html
@galaxyfreiburg
#Bioinformatics #ImageAnalysis #GelElectrophoresis #OpenScience #ReproducibleResearch #GalaxyProject #QuPath #Bioimaging #LifeSciences #OpenSourceTools #ScienceEducation #DataAnalysis #ResearchTools
Gel Electrophoresis is a staple of molecular biology, providing a way to separate DNA, RNA, or proteins by size and charge. While gels are usually interpreted visually, the ability to quantify band intensities offers much richer insights—allowing researchers to estimate product yields, verify PCR amplification, or assess protein purity.
On Day 2 of European Galaxy Days, Beatriz Serrano-Solano presented Update by the Imaging Community.
Read more: https://galaxyproject.org/community/sig/image-analysis/
@galaxyfreiburg
#imaging_community #bioimaging #EGD2025 #galaxyproject #eosc #fair #community #open_science
Amazing talk by Björn Grüning from @galaxyfreiburg at @unifreiburg and task area leader @nfdi4bioimage on the power of #Galaxy at #CoRDI2025. Cloud-deployed workflows as a basis for reuse across domains.
An example? Voronoi segmentation in #bioimaging, forest imagery & astronomy. 👏
Fabrizio Musacchio
@Co_Biologists
NFDI4BIOIMAGE
Academic Europe
de.NBI & ELIXIR Germany
CSBJ
Galaxy-Team der Uni Freiburg
galaxyproject